8ebx_ABHK : 3D-footprint complex

structure name	XPA REPOSITIONING CORE7 OF TFIIH RELATIVE TO XPC-DNA LESION (AP)
experiment	NMR
structural superfamily	Putative DNA-binding domain;Glucocorticoid receptor-like DNA-binding domain;
reference complex	8ebx_K
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8ebx_A interface=500,520, kvdeygakdyrlqmplkddhtsrplwvapdghifleafspvykyaqdflvaiaepvcrpthvheykltayslyaavsvglqtsditeylrklsktgvpdgimqfiklctvsygkvklvlkhnryfveschpdviqhllqdpvirecrlrnsegeatetvsfevkqemieelqkrcihleypllaeydfrndsvnpdinidlkptavlrpyqekslrkmfgngrarsgvivlpcgagkslvgvtaactvrkrclvlgnsavsveqwkaqfkmwstiddsqicrftsdakdkpigcsvaistysmlghttkrsweaervmewlktqewglmildevhtipakmfrrvltivqahcklgltatlvreddkivdlnfligpklyeanwmelqnngyiakvqcaevwcpmspefyreyvaiktkkrillytmnpnkfracqflikfherrndkiivfadnvfalkeyairlnkpyiygptsqgermqilqnfkhnpkintifisKvgdtsfdlpeanvliqissHggsrrqeaqrlgrvlrynaffyslvsqdtqemaystkrqrflvdqgysfkvitklagmeeedlafstkeeqqqllqkvlaatdl > 8ebx_B interface=454,456, mklnvdgllvyfpydyiypeqfsymrelkrtldakghgvlempsgtgktvsllalimayqrayplevtkliycsrtvpeiekvieelrkllnfyekqegeklpflglalssrknlcihpevtplrfgkdvdgkchsltasyvraqyqhdtslphcrfyeefdahgrevplpagiynlddlkalgrrqgwcpyflarysilhanvvvysyhylldpkiadlvskelarkavvvfdeahnidnvcidsmsvnltrrtldrcqgnletlqktvlraehflgflrrlleyvkwrlrvqhvvqesppaflsglaqrvciqrkplrfcaerlrsllhtleitdladfspltllanfatlvstyakgftiiiepfddrtptianpilhfscmdaslaikpvferfqsviitsgtlspldiypkildfhpvtmatftmtlarvclcpmiigrgndqvaissKfEtrediavirnygnlllemsavvpdgivafftsyqymestvaswyeqgileniqrnkllfietqdgaetsvalekyqeacengrgaillsvargkvsegidfvhhygravimfgvpyvytqsrilkarleylrdqfqirendfltfdamrhaaqcvgrairgktdyglmvfadkrfargdkrgklprwiqehltdanlnltvdegvqvakyflrqmaqpfhr > 8ebx_H interface=24,25,79,84,125,129,166,174,175, qplptaiglyknhplyalkrhllKYeaiypetaailgycrgeavysrdcvhtlhsrdtwlkkarvvrlgevpykmvkgFsnraRkarlaepqlreendlglfgywqteeyqppvavdgkvprneFgnvYlflpsmmpigcvqlnlpnlhrvarkldidcvqaitgFdfhggysHPvtdgyivceefkdvlltaweneqavierkekekkekralgnwkllakgllirerlkrrygpgtssqaeaarilaaswpqnredeekqklkggpkktkrekkaaashlfpfekl > 8ebx_K interface=41,71,73,74, yviceecgkefmdsylmnhfdlptcdncrdaddkhklitkTeakqeyllkdcdlekrepplkfivkknphHsQWgdmklylklqivkrslevwgsqealeeakevrqenrekmkqkkfdkkvkelrravrssvwkretivhqheygpeenleddmyrktctmcgheltyekm
interface signature	KH/KE/KYFRFYFHP/THQW

Estimated binding specificities ?

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# IC=4.434 IC/col=0.261 n_of_columns=17

specificity:

A |  13  24  13  24  24  24  24  24  24  24  24  24  24  24   0   0   0
C |  54  24  54  24  24  24  24  24  24  24  24  24  24  24  96   0   0
G |  13  24  13  24  24  24  24  24  24  24  24  24  24  24   0   0  96
T |  16  24  16  24  24  24  24  24  24  24  24  24  24  24   0  96   0

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updated Mon Dec 16 00:31:30 2024