8efk_A : 3D-footprint complex

structure name	STRUCTURE OF LATES CALCARIFER DNA POLYMERASE THETA POLYMERASE DOMAIN WITH HAIRPIN DNA
experiment	NMR
structural superfamily	DNA/RNA polymerases;Ribonuclease H-like;
sequence family	DNA polymerase family A;
reference complex	8ef9_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8efk_A interface=319,329,414,421,423,431,487,488,489,492,496,500,504, tfsiidvasdrrlfntfikewktkeryslalacekrehdsdglvliglsvcwgardsyyislqqvserlgqvrsclsrpggvvvtydiiqvyktlvlscgislagncedpkvacwlldpgseertlpnmvtvycpeelplldglgsahahcprvraatksvlvhavmnhltgllekdsmldlfrsiempsqvclallelngvgfsveecerqkhvmqakltalesqaynlaghsfsltsiddiaqvlflelhlpfsttkdileklrplhplpgvilewrritnaltkvvfplqrekqyhptlamdriypiaqthtatgRvsftepniqNvpkdfeicmafsvsmrhafvpfsggmilaadysqlelrvlahlskdqrllqvlnggadvfrciaaewkgvdpetvndslrqqakQicygiiYgMgakslgeQmgveendaacyiesfkarykginaflketvkncikngyvqtlmgrrrylpgisntNTHikAhaeRqavNttvQgsaadivklatvniqkrlrktyptaplshqhtlrgaffvlqlhdeliyetreedliqvaqivkremesavklyvklkakvkvgpswgnlqdldl
interface signature	RNQYMQNTHARNQ

Estimated binding specificities ?

contact

# IC=7.099 IC/col=0.546 n_of_columns=13

specificity:

A |   0   0   0   0  13   0  24  24  24  24  24  24  13
C |   0   0   0   0  13   0  24  24  24  24  24  24  54
G |   0   0   0   0  54  96  24  24  24  24  24  24  13
T |  96  96  96  96  16   0  24  24  24  24  24  24  16

scan!

home
updated Tue Dec 17 16:29:18 2024