8ff5_AIJ : 3D-footprint complex

structure name	CRYO-EM STRUCTURE OF CASCADE-DNA-FULLRLOOP IN TYPE I-B CAST SYSTEM
experiment	NMR
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8ff5_A interface=78,90, miaplilyldvpfttfresharemgktypvpppatvygmllslvgetnvyrhcgvelaiamlsspkksrilrqmrrfKnadfshpenviPcyqeilsnlkcliwvrsdeekiqpslreriqlafdhpelvrrfgclflgesdqliktiklaredylegvrqwairdnrgrltlpywvdhvgsrntrflryrieemdrlsppdlawtmvqspi > 8ff5_I interface=112,113,114,121,138,180,289,290,294,295, tqpkislslhaadttimhrvgmtglymtlkrlekqyplsrqrgghiswfltadtielfwegsdfialswlinesfqlddtglihlvgldndridlrqkihihegicgvflrLNKfyqageIintelrfeekqveyqyKsltwyahqtfaeklceadtqqlrhdyiqitswlylggivrhArtqnttkleekpeyalallfvpvvchycllhipsedlkerkphrylvvipeikdfedasqrrwrlqqletkqfhvsslgeagllyyslddiqpevayyqacqvwlyekTNkasRQrtlmsieeikidknilityqqvqkyfktnyqiikykqifikvnpirsliadnlvkgihwwsnfweklviedskeylfnqlfsnregfiimaenseedkqylifikvfqqamkgnfakiyakteegkdppikkkverlraelnycydelsfkeylsdflvrgglnkyfnehqeeiallikkspwqeiriwsllaiasykp > 8ff5_J interface=24,28, nseedkqylifikvfqqamkgnfAkiyAkteegkdppikkkverlraelnycydelsfkeylsdflvrgglnkyfnehqeeiallikkspwqeiriwsllaiasykpkd
interface signature	KP/LNKIKATNRQ/AA

Estimated binding specificities ?

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# IC=4.915 IC/col=0.246 n_of_columns=20

specificity:

A |  24  24  24  24  24  24  24   7  20   0   0  96  12  24  24  24  24  24  24  24
C |  24  24  24  24  24  24  24  74  20  96  96   0  12  24  24  24  24  24  24  24
G |  24  24  24  24  24  24  24   7  22   0   0   0  12  24  24  24  24  24  24  24
T |  24  24  24  24  24  24  24   8  34   0   0   0  60  24  24  24  24  24  24  24

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updated Sun Dec 17 23:07:36 2023