8ff5_CDEFGHKL : 3D-footprint complex

Interface of input file ?

structure name	CRYO-EM STRUCTURE OF CASCADE-DNA-FULLRLOOP IN TYPE I-B CAST SYSTEM
experiment	NMR
reference complex	8fcj_E
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8ff5_C interface=23,98,126, pnyylygtvltryglaslnhdiRrgnktilqkgywnngkihsfvgssairwalrfylqkqgylvnrvwdeeehinrltsedfdpekfydddifgfalLpnqrmgalgmnmavsltpydgavklgaKsgrekdstslhfteyhatryqyyfgidathlkdfsrilpmidgimnlpkvggssnifnypfcpdslvfqwtnhfasyisycfeycdpkskeaklsqefidevecgqidpsklwiggtivkdlqqldnfessplnkahiyrnrnemiealktvikrdlgl > 8ff5_D interface=23,26,28,98,125,131,134,135,136,137,138, pnyylygtvltryglaslnhdiRrgNkTilqkgywnngkihsfvgssairwalrfylqkqgylvnrvwdeeehinrltsedfdpekfydddifgfalLpnqrmgalgmnmavsltpydgavklgAksgreKdsTSLHFteyhatryqyyfgidathlkdfsrilpmidgimnlpkvggssnifnypfcpdslvfqwtnhfasyisycfeycdpkskeaklsqefidevecgqidpsklwiggtivkdlqqldnfessplnkahiyrnrnemiealktvikrdlgl > 8ff5_E interface=23,26,98,132,135,136,137,138, pnyylygtvltryglaslnhdiRrgNktilqkgywnngkihsfvgssairwalrfylqkqgylvnrvwdeeehinrltsedfdpekfydddifgfalLtpnqrmgalgmnmavsltpydgavklgaksgreKdsTSLHfteyhatryqyyfgidathlkdfsrilpmidgimnlpkvggssnifnypfcpdslvfqwtnhfasyisycfeycdpkskeaklsqefidevecgqidpsklwiggtivkdlqqldnfessplnkahiyrnrnemiealktvikrdlgl > 8ff5_F interface=23,26,28,98,131,134,135,136,137,138, pnyylygtvltryglaslnhdiRrgNkTilqkgywnngkihsfvgssairwalrfylqkqgylvnrvwdeeehinrltsedfdpekfydddifgfalLpnqrmgalgmnmavsltpydgavklgaksgreKdsTSLHFteyhatryqyyfgidathlkdfsrilpmidgimnlpkvggssnifnypfcpdslvfqwtnhfasyisycfeycdpkskeaklsqefidevecgqidpsklwiggtivkdlqqldnfessplnkahiyrnrnemiealktvikrdlgl > 8ff5_G interface=23,26,28,98,131,134,135,136,137,138, pnyylygtvltryglaslnhdiRrgNkTilqkgywnngkihsfvgssairwalrfylqkqgylvnrvwdeeehinrltsedfdpekfydddifgfalLpnqrmgalgmnmavsltpydgavklgaksgreKdsTSLHFteyhatryqyyfgidathlkdfsrilpmidgimnlpkvggssnifnypfcpdslvfqwtnhfasyisycfeycdpkskeaklsqefidevecgqidpsklwiggtivkdlqqldnfessplnkahiyrnrnemiealktvikrdlgl > 8ff5_H interface=23,26,28,125,131,134,136,137,138, pnyylygtvltryglaslnhdiRrgNkTilqkgywnngkihsfvgssairwalrfylqkqgylvnrvwdeeehinrltsedfdpekfydddifgfallpnqrmgalgmnmavsltpydgavklgAksgreKdsTsLHFteyhatryqyyfgidathlkdfsrilpmidgimnlpkvggssnifnypfcpdslvfqwtnhfasyisycfeycdpkskeaklsqefidevecgqidpsklwiggtivkdlqqldnfessplnkahiyrnrnemiealktvikrdlgl > 8ff5_K interface=44,47, nseedkqylifikvfqqamkgnfakiyakteegkdppikkkveRlrAelnycydelsfkeylsdflvrgglnkyfnehqeeiallikkspwqeiriwsllaiasykpkd > 8ff5_L interface=44,47, nseedkqylifikvfqqamkgnfakiyakteegkdppikkkveRlrAelnycydelsfkeylsdflvrgglnkyfnehqeeiallikkspwqeiriwsllaiasykpkd
interface signature	RLK/RNTLAKTSLHF/RNLKTSLH/RNTLKTSLHF/RNTLKTSLHF/RNTAKTLHF/RA/RA

Estimated binding specificities ?

contact

# IC=39.584 IC/col=1.200 n_of_columns=33

specificity:

A |   0  16  24  16   0   0   0   0  96  96   0  96   0   0   0   0   0   0   0   0  96   8   0  96  96  96   0   0  96   0   0   0   0
C |  96  16  24  56   0   0   0   0   0   0  96   0   0   0   0   0  96  96   0   0   0   8   0   0   0   0   0   0   0  96   0   0  96
G |   0  16  24  16  96   0   0   0   0   0   0   0  96   0  96  96   0   0   0   0   0   8   0   0   0   0   0  96   0   0   0   0   0
T |   0  48  24   8   0  96  96  96   0   0   0   0   0  96   0   0   0   0  96  96   0  72  96   0   0   0  96   0   0   0  96  96   0

scan!

home
updated Sat Jun 27 09:27:26 2026