8ff5_CDEFGHKL : 3D-footprint complex

Interface of input file ?

structure name	CRYO-EM STRUCTURE OF CASCADE-DNA-FULLRLOOP IN TYPE I-B CAST SYSTEM
experiment	NMR
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8ff5_C interface=23,98,126, pnyylygtvltryglaslnhdiRrgnktilqkgywnngkihsfvgssairwalrfylqkqgylvnrvwdeeehinrltsedfdpekfydddifgfalLpnqrmgalgmnmavsltpydgavklgaKsgrekdstslhfteyhatryqyyfgidathlkdfsrilpmidgimnlpkvggssnifnypfcpdslvfqwtnhfasyisycfeycdpkskeaklsqefidevecgqidpsklwiggtivkdlqqldnfessplnkahiyrnrnemiealktvikrdlgl > 8ff5_D interface=23,26,28,98,125,131,134,135,136,137,138, pnyylygtvltryglaslnhdiRrgNkTilqkgywnngkihsfvgssairwalrfylqkqgylvnrvwdeeehinrltsedfdpekfydddifgfalLpnqrmgalgmnmavsltpydgavklgAksgreKdsTSLHFteyhatryqyyfgidathlkdfsrilpmidgimnlpkvggssnifnypfcpdslvfqwtnhfasyisycfeycdpkskeaklsqefidevecgqidpsklwiggtivkdlqqldnfessplnkahiyrnrnemiealktvikrdlgl > 8ff5_E interface=23,26,98,132,135,136,137,138, pnyylygtvltryglaslnhdiRrgNktilqkgywnngkihsfvgssairwalrfylqkqgylvnrvwdeeehinrltsedfdpekfydddifgfalLtpnqrmgalgmnmavsltpydgavklgaksgreKdsTSLHfteyhatryqyyfgidathlkdfsrilpmidgimnlpkvggssnifnypfcpdslvfqwtnhfasyisycfeycdpkskeaklsqefidevecgqidpsklwiggtivkdlqqldnfessplnkahiyrnrnemiealktvikrdlgl > 8ff5_F interface=23,26,28,98,131,134,135,136,137,138, pnyylygtvltryglaslnhdiRrgNkTilqkgywnngkihsfvgssairwalrfylqkqgylvnrvwdeeehinrltsedfdpekfydddifgfalLpnqrmgalgmnmavsltpydgavklgaksgreKdsTSLHFteyhatryqyyfgidathlkdfsrilpmidgimnlpkvggssnifnypfcpdslvfqwtnhfasyisycfeycdpkskeaklsqefidevecgqidpsklwiggtivkdlqqldnfessplnkahiyrnrnemiealktvikrdlgl > 8ff5_G interface=23,26,28,98,131,134,135,136,137,138, pnyylygtvltryglaslnhdiRrgNkTilqkgywnngkihsfvgssairwalrfylqkqgylvnrvwdeeehinrltsedfdpekfydddifgfalLpnqrmgalgmnmavsltpydgavklgaksgreKdsTSLHFteyhatryqyyfgidathlkdfsrilpmidgimnlpkvggssnifnypfcpdslvfqwtnhfasyisycfeycdpkskeaklsqefidevecgqidpsklwiggtivkdlqqldnfessplnkahiyrnrnemiealktvikrdlgl > 8ff5_H interface=23,26,28,125,131,134,136,137,138, pnyylygtvltryglaslnhdiRrgNkTilqkgywnngkihsfvgssairwalrfylqkqgylvnrvwdeeehinrltsedfdpekfydddifgfallpnqrmgalgmnmavsltpydgavklgAksgreKdsTsLHFteyhatryqyyfgidathlkdfsrilpmidgimnlpkvggssnifnypfcpdslvfqwtnhfasyisycfeycdpkskeaklsqefidevecgqidpsklwiggtivkdlqqldnfessplnkahiyrnrnemiealktvikrdlgl > 8ff5_K interface=44,47, nseedkqylifikvfqqamkgnfakiyakteegkdppikkkveRlrAelnycydelsfkeylsdflvrgglnkyfnehqeeiallikkspwqeiriwsllaiasykpkd > 8ff5_L interface=44,47, nseedkqylifikvfqqamkgnfakiyakteegkdppikkkveRlrAelnycydelsfkeylsdflvrgglnkyfnehqeeiallikkspwqeiriwsllaiasykpkd
interface signature	RLK/RNTLAKTSLHF/RNLKTSLH/RNTLKTSLHF/RNTLKTSLHF/RNTAKTLHF/RA/RA

Estimated binding specificities ?

contact

# IC=35.670 IC/col=0.673 n_of_columns=53

specificity:

A |  24  24  24  24  24  24  24  24   2  19  31  19   0   7   0   0  96  67   0  96   0   0   0   7   0   0   0   0  96  16   0  96  96  96   0   0  96   0   0   4   0  24  24  24  24  24  24  24  24  24  24  24  24
C |  24  24  24  24  24  24  24  24  88  19  23  38   0   8   0   0   0   9  96   0   0   0   0   7  96  96   0   0   0  14   0   0   0   0   0   0   0  96   0   7  96  24  24  24  24  24  24  24  24  24  24  24  24
G |  24  24  24  24  24  24  24  24   2  20  21  19  96   7   0   0   0   9   0   0  96   0  96  75   0   0   0   0   0  14   0   0   0   0   0  96   0   0   0   4   0  24  24  24  24  24  24  24  24  24  24  24  24
T |  24  24  24  24  24  24  24  24   4  38  21  20   0  74  96  96   0  11   0   0   0  96   0   7   0   0  96  96   0  52  96   0   0   0  96   0   0   0  96  81   0  24  24  24  24  24  24  24  24  24  24  24  24

scan!

home
updated Sun Dec 17 23:06:38 2023