8ffi_AB : 3D-footprint complex

structure name	STRUCTURE OF TETRAMERIZED MAPSPARTA UPON GUIDE RNA-MEDIATED TARGET DNA BINDING
experiment	NMR
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8ffi_A interface=262,357,361, rnkifishatpddndftrwlalkliglgyevwcdilfldkgvdfwsniekviredtckfllvsssysnqregvlkelavaakvkkqlkddkfiiplaideqlsyddinidivrlnaidfkmswarglkdileafekqkvpkevadasksnllyqqiflhdksviekeeiydsnwlsilsfpeelrfheynwmlpkrfdvreltfpavryknylctfawaydftyhlpktetyhksktiripteeilsgsydsnfirnaeckRlivqllnkafelrmkdkevqeyemsnktaywlekgklekdkfektmlvgkqkdknwhfaisgasklypfpvlmisshifftadgkklidsssvqHssrRrqgknwwnntwrtkllafikylsdddtsfylemgseekvfvsnepvkfkgnvsynipe > 8ffi_B interface=209,353,397, mkeliyieepkilfahgqkctdardglalfgplnnlygiksgvigtkqglkifrdyldhiqkpiynsnsitrpmfpgfeavfdckwestgitfkevtnedigkflynssthkrtydlvslfidkiisanknedenvdvwfvivpdeiykycrpnsvlpaetynydaqfhdqfkarllkhtiptqifrestlawrdfknafglpirdfsKieghlawtistaafykaggkpwklsdvrngvcylglvykkveksknprnaccaaqmfldngdgtvfkgevgpwynpkngqyhlepkeakallsqslqsykeqigeypkevfihaktrfnhqewdaflevtpketnlvgvtiskTkplklyktegdytilrgnayvvnersaflwtvgyvpkiqtalsMevpnplfieinkgeadikqvlkdilsltklnynacifadgepvtlrfadkigeiltastdiktpplafkyyi
interface signature	RHR/KTM

Estimated binding specificities ?

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# IC=1.838 IC/col=0.092 n_of_columns=20

specificity:

A |  24  24  24  24  24  88  16  24  24  21  24  24  24  19  19  19  14  23  12  24
C |  24  24  24  24  24   2  16  24  24  23  24  24  24  19  39  38  14  21  60  24
G |  24  24  24  24  24   2  48  24  24  21  24  24  24  38  19  19  54  21  12  24
T |  24  24  24  24  24   4  16  24  24  31  24  24  24  20  19  20  14  31  12  24

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updated Sun Dec 17 23:07:55 2023