8ffi_EF : 3D-footprint complex

structure name	STRUCTURE OF TETRAMERIZED MAPSPARTA UPON GUIDE RNA-MEDIATED TARGET DNA BINDING
experiment	NMR
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8ffi_E interface=262,357,361, rnkifishatpddndftrwlalkliglgyevwcdilfldkgvdfwsniekviredtckfllvsssysnqregvlkelavaakvkkqlkddkfiiplaideqlsyddinidivrlnaidfkmswarglkdileafekqkvpkevadasksnllyqqiflhdksviekeeiydsnwlsilsfpeelrfheynwmlpkrfdvreltfpavryknylctfawaydftyhlpktetyhksktiripteeilsgsydsnfirnaeckRlivqllnkafelrmkdkevqeyemsnktaywlekgklekdkfektmlvgkqkdknwhfaisgasklypfpvlmisshifftadgkklidsssvqHssrRrqgknwwnntwrtkllafikylsdddtsfylemgseekvfvsnepvkfkgnvsynipe > 8ffi_F interface=209,290, mkeliyieepkilfahgqkctdardglalfgplnnlygiksgvigtkqglkifrdyldhiqkpiynsnsitrpmfpgfeavfdckwestgitfkevtnedigkflynssthkrtydlvslfidkiisanknedenvdvwfvivpdeiykycrpnsvlpaetynydaqfhdqfkarllkhtiptqifrestlawrdfknafglpirdfsKieghlawtistaafykaggkpwklsdvrngvcylglvykkveksknprnaccaaqmfldngdgtvfkgevgpwynpkngqYhlepkeakallsqslqsykeqigeypkevfihaktrfnhqewdaflevtpketnlvgvtisktkplklyktegdytilrgnayvvnersaflwtvgyvpkiqtalsmevpnplfieinkgeadikqvlkdilsltklnynacifadgepvtlrfadkigeiltastdiktpplafkyyi
interface signature	RHR/KY

Estimated binding specificities ?

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# IC=1.594 IC/col=0.080 n_of_columns=20

specificity:

A |  24  24  24  24  24  88  16  24  24  19  24  24  24  16  16  19  24  24  16  24
C |  24  24  24  24  24   2  16  24  24  20  24  24  24  16  48  38  24  24  45  24
G |  24  24  24  24  24   2  48  24  24  19  24  24  24  45  16  19  24  24  19  24
T |  24  24  24  24  24   4  16  24  24  38  24  24  24  19  16  20  24  24  16  24

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updated Sun Dec 17 23:08:07 2023