8g9l_AB : 3D-footprint complex

structure name	DNA INITIATION SUBCOMPLEX OF XENOPUS LAEVIS DNA POLYMERASE ALPHA- PRIMASE
experiment	NMR
structural superfamily	DNA/RNA polymerases;Ribonuclease H-like;
reference complex	8g9l_A 8g9l_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8g9l_A interface=338,446,573,577,579,584,586,675,703, qvfrfywldayedqysqpgvvylfgkvwiesadayvsccvsvkniertvyllprenrvqlstgkdtgapvsmmhvyqefneavaekykimkfkskkvdkdyafeipdvpasseylevrysadspqlpqdlkgetfshvfgtntsslelfllsrkikgpswleikspqlssqpmswckveavvtrpdqvsvvkdlapppvvvlslsmktvqnakthqneivaiaalvhhtfpldkappqppfqthfcvlsklndcifpydyneavkqknanieialtertllgfflakihkidpdvivghdiygfdlevllqrinsckvpfwskigrlrrsvmpklggRsgfaernaacgriicdieisakelircksyhlselvhqilkaervvippenirnayndsvhllymlentwidakfilqimcelnvlplalqitniagnvmsrtlmggRserneylllhaftennfivpdkpvaayagglvlepkvgfydkfillldfnslypsiiqeynicfttvhreadeipelphsdlemgilpreirklverrrhvkqlmkqpdlnpdlylqydirqkalkLtanSmYgclgFsYsrfyakplaalvthqgreillhtkemvqkmnleviygdtdsimintncnnleevfklgnrvkseinksyklleididgifksllllkkKkyaaltveptgdgkyvtkqelkgldivRrdwcelakqagnyvisqilsdqprdsiveniqkklteigenvtngtvpitqyeinkaltkdpqdypdkkslphvhvalwinsqggrkvkagdtisyvicqdgsnlsasqrayaqeqlqkqenlsidtqyylsqqvhpvvaricepidgidsaliamwlgldpsqf > 8g9l_B interface=33,37,77,78,81,90,93, isleqidgfaaksfplcmrqlhkslrenhhlrHggrMqyglflkgigltleqalqfwrleftkgkvdsekfdkvyaYSirHnygkegkrTdyTpyscmkvilsnppsqgdyhgcpfrhsdpellkqklqsfkvpssginqilelvkgmhyqlacqkyfelthsvddcgfslnhpnqyfaesqkllt
interface signature	RRLSYFYKR/HMYSHTT

Estimated binding specificities ?

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# IC=9.764 IC/col=0.651 n_of_columns=15

specificity:

A |  13   0  96   0  13  24  96  24  24  24  24  24   0   0   0
C |  13  96   0  96  16  24   0  24  24  24  24  24  96   0   0
G |  16   0   0   0  54  24   0  24  24  24  24  24   0   0  96
T |  54   0   0   0  13  24   0  24  24  24  24  24   0  96   0

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updated Mon Dec 16 03:19:48 2024