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3D-footprint cannot reliably estimate the specificity of 'Nucleic acid-binding proteins', as they bind to single-stranded DNA and thus accumulate more base contacts.

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updated Tue Jun 30 15:27:12 2026

structure name	RUVA HOLLIDAY JUNCTION DNA COMPLEX
experiment	NMR
structural superfamily	RuvA domain 2-like;Nucleic acid-binding proteins;
sequence family	RuvA N terminal domain; Helixhairpinhelix motif;
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8gh8_C interface=83,84,88, mirylrglvlkkeaggfvllaggvgfflqaptpflqaleegkevgvhthlllkeeglslygfpdeenlalfelllsvsgvgpKValaLlsalpprllarallegdarlltsasgvgrrlaerialelkgkvpphllagek