8glw_BCEFGX : 3D-footprint complex

structure name	CRYOEM STRUCTURE OF THE TNSC(1-503)-TNSD(1-318)-DNA COMPLEX IN A 7:2:1 STOICHIOMETRY FROM E. COLI TN7
experiment	NMR
structural superfamily	P-loop containing nucleoside triphosphate hydrolases;
reference complex	7mcs_F
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8glw_B interface=239, atriqavyrdtgveayrdnpfiealpplqesvnsaaslksslqltssdlqksrvirahticripddyfqplgthlllserisvmirggyvgrnpktgdlqkhlqngyervqtgeletfrfeearstaqsllligcsgsgkttslhrilatypqviyhrelnveqvvylkidcshngslkeiclnffraldralgsnyerryglkrhgietmlalmsqianahalgllvideiqhlsrsRsggsqemlnffvtmvniigvpvmligtpkareifeadlrsarrgagfgaifwdpiqqtqrgkpnqewiaftdnlwqlqllqrkdallsdevrdvwyelsqgvmdivvklfvlaqlralalgneritagllrqvyqdelkpvhpmlealrsgiperiarysdlvvpeidkrliqlqldiaaiqeqtpeekalqeldtedqrhlylmlkedydsslliptikkafsqnptmtrqkllplvlqwlme > 8glw_C interface=205,239, atriqavyrdtgveayrdnpfiealpplqesvnsaaslksslqltssdlqksrvirahticripddyfqplgthlllserisvmirggyvgrnpktgdlqkhlqngyervqtgeletfrfeearstaqsllligcsgsgkttslhrilatypqviyhrelnveqvvylkidcshngslkeiclnffraldralgsnyerryglkRhgietmlalmsqianahalgllvideiqhlsrsRsggsqemlnffvtmvniigvpvmligtpkareiffgaifwdpiqqtqrgkpnqewiaftdnlwqlqllqrkdallsdevrdvwyelsqgvmdivvklfvlaqlralalgneritagllrqvyqdelkpvhpmlealrsgiperiarysdlvv > 8glw_E interface= triqavyrdtgveayrdnpfiealpplqesvnsaaslksslqltssdlqksrvirahticripddyfqplgthlllserisvmirggyvgrnpktgdlqkhlqngyervqtgeletfrfeearstaqsllligcsgsgkttslhrilatypqviyhrelnveqvvylkidcshngslkeiclnffraldralgsnyerryglkrHgietmlalmsqianahalgllvideiqhlsrsrSggsqemlnffvtmvniigvpvmligtpkareifeadlrsarrgagfgaifwdpiqqtqrgkpnqewiaftdnlwqlqllqrkdallsdevrdvwyelsqgvmdivvklfvlaqlralalgneritagllrqvyqdelkpvhpmlealrsgiperiarysdlvvpeidkrliqlqldiaaiqeqtpeekalqeldtedqrhlylmlkedydsslliptikkafsqnptmtrqkllplvlqwlme > 8glw_F interface=239, atriqavyrdtgveayrdnpfiealpplqesvnsaaslksslqltssdlqksrvirahticripddyfqplgthlllserisvmirggyvgrnpktgdlqkhlqngyervqtgeletfrfeearstaqsllligcsgsgkttslhrilatypqviyhrelnveqvvylkidcshngslkeiclnffraldralgsnyerryglkrhgietmlalmsqianahalgllvideiqhlsrsRsggsqemlnffvtmvniigvpvmligtpkareifeadlrsarrgagfgaifwdpiqqtqrgkpnqewiaftdnlwqlqllqrkdallsdevrdvwyelsqgvmdivvklfvlaqlralalgneritagllrqvyqdelkpvhpmlealrsgiperiarysdlvv > 8glw_G interface=206, gatriqavyrdtgveayrdnpfiealpplqesvnsaaslksslqltssdlqksrvirahticripddyfqplgthlllserisvmirggyvgrnpktgdlqkhlqngyervqtgeletfrfeearstaqsllligcsgsgkttslhrilatypqviyhrelnveqvvylkidcshngslkeiclnffraldralgsnyerryglkRhgietmlalmsqianahalgllvideiqhlsrsrsggsqemlnffvtmvniigvpvmligtpkareiffgaifwdpiqqtqrgkpnqewiaftdnlwqlqllqrkdallsdevrdvwyelsqgvmdivvklfvlaqlralalgneritagllrqvyqdelkpvhpmlealrsgiperiarysdl > 8glw_X interface= mrnfpvpysneliystiaragvyqgivspkqlldevygnrkvvatlglpshlgviarhlhqtgryavqqliyehtlfplyapfvgkerrdeairlmeyqaqgavhlmlgvaasrvksdnrfrycpdcvalqlnrygeafwqrdwylpalpycpkhgalvffdravddhrhqfwalghtellsdypkdslsqltalaayiaplldaPraqelspsleqwtlfyqrlaqdlgltkskhirhdlvaervrqtfsdealekldlklaenkdtcwlksifrkhrkafsylqhsivwqallpkltviealqqasal
interface signature	R/RR/HS/R/R/P

Estimated binding specificities ?

contact

# IC=3.604 IC/col=0.200 n_of_columns=18

specificity:

A |   6  24  24  24  24  24  24   6   9  75  24  24  24  24  24  24  24   0
C |   9  24  24  24  24  24  24   6  75   9  24  24  24  24  24  24  24   7
G |  75  24  24  24  24  24  24  78   6   6  24  24  24  24  24  24  24   0
T |   6  24  24  24  24  24  24   6   6   6  24  24  24  24  24  24  24  89

scan!

home
updated Mon Dec 16 03:30:39 2024