8h40_AEGXY : 3D-footprint complex

Interface of input file ?

structure name	CRYO-EM STRUCTURE OF THE TRANSCRIPTION ACTIVATION COMPLEX NTCA-TAC
experiment	NMR
structural superfamily	cAMP-binding domain-like;"Winged helix" DNA-binding domain;
reference complex	8h40_X
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8h40_A interface=149,151,165,166,220,223,390, afllpdlieiqrssfrwfleeglieelnsfspitdytgklelhflghnyklkepkysveeakrrdstyavqmyvptrllnketgdikeqevfigdlplmtdrgtfiingaervivnqivrspgvyykseidkngrrtysaslipnrgaWlKfetdrndlvwvriDKtrklsaqvllkalglsdneifdalrhpeyfqktiekegqfseeealmelyrklRpgEpptvlggqqlldsrffdpkrydlgrvgryklnkklrlsvpdtvrvltsgdilaavdylinleydigsiddidhlgnrrvrsvgellqnqvrvglnrleriirermtvsdaevltpaslvnpkplvaaikeffgssqlsqfmdqtnplaelthkrrlsalgpggltrEragfavrdihpshygricpietpegpnagligslatharvnqygfletpfrpvengrvrfdqpaaymtadeeddlrvapgdipvdengyiigpqvpvryrqefstttpeqvdyvavspvqivsvatsmipflehddanralmgsnmqrqavpllkperplvgtgleaqgardsgmvivsrtdgdvvyvdateirvrvsgqlptasgkstdngqltsqkgqeirytvskyqrsnqdtclnqkplvrigervvagqvladgssteggelalgqnivvaympwegynyedailiserlvqddiytsihiekyeiearqtklgpeeitreipnvgedalrqldeqgiirigawveagdilvgkvtpkgesdqppeekllraifgekardvrdnslrvpngekgrvvdvrlftreqgdelppganmvvrvyvaqkrkiqvgdkmagrhgnkgiisrilpiedmpylpdgspvdivlnplgvpsrmnvgqvfecllgwaghtlgvrfkitpfdemygeessrrivhgklqeardetgkdwvynpddpgkimvydgrtgeafdrpvtigvaymlklvhlvddkiharstgpyslvtqqplggkaqqggqrfgemevwaleafgaaytlqelltvksddmqgrnealnaivkgkaiprpgtpesfkvlmrelqslgldiavhkvetqadgssldv > 8h40_E interface= tnqfdyvkiglasperirqwgertlpngqvvgevtkpetinyrtlkpemdglfcerifgpakdwechcgkykrvrhrgivcercgvevtesrvrrhrmgyiklaapvahvwylkgipsyisilldmplrdveqivyfnsyvvlspgnaEtLtykqllsedqwleIEdqiysedsqlqgvevgigaeallrlladinleqeaeslreeigsakgqkraklIkrLrvidnfiatgskpewmvmtvipvippdlrpmvqldggrfatsdlndlyrrvinrnnrlarlqeilapeiivrnekrmlqeavdalidngrrgrtvvgannrplkslsdiiegkqgrfrqnllgkrvdysgrsvivvgpklkihqcglpremaielfqpfvinrlirSgmvnnikaakklisrndpsvwdvleevieghpvmlnraptlhrlgiqafepilvegraiqlhplvcpafnadfdgdqmavhvplslesqaearllmlasnnilspatgrpiitpsqdmvlgayyltaenpgatkgagkyfaslddvimafqqeqidlhayvyvrfdgdvesdqpdtepvkvttnedgsrtvlykyrrvredaqgnvisqyiyttpgrviynkaiqealas > 8h40_G interface=4,6,7,10,18,88,89,100,128,130,131,132,133,136,140,143,144,158,161,287, yteDsIRlyLqeigrirLlradeeielarkiadllelervrerlseklerdprdsewaeavqlplpafryrlhigrrakdkmvqsnlRLvvsiakkymnRglsfqdliqegslgliraaekfdhekgYkFSTYatWwirQaiTRaiadqsrtirlpvHlyEtisrikkttkllsqemgrkpteeeiatrmemtieklrfiaksaqlpisletpigkeedsrlgdfiesdgetpedqvsknllredlekvldslsprerdvlrlryglddgrmktleeigqifnvtrErirqieakalrklrhpnrnsvlkeyir > 8h40_X interface=163,166,168, vetfernktiffpgdpaervyfllkgavklsrvyeageeitvallrensvfgvlslltgnksdrfyhavaftpvellsapieqveqalkenpelsmlmlrglssrilqtemmietlahrdmgsrlvsfllilcrdfgvpcadgitidlklshqaiaeaigstRvtVtRllgdlrekkmisihkkkitvhkpvtlsr > 8h40_Y interface=162,163,164,167, vetfernktiffpgdpaervyfllkgavklsrvyeageeitvallrensvfgvlslltgnksdrfyhavaftpvellsapieqveqalkenpelsmlmlrglssrilqtemmietlahrdmgsrlvsfllilcrdfgvpcadgitidlklshqaiaeaigsTRVtvTrllgdlrekkmisihkkkitvhkpvtlsr
interface signature	WKDKREE/ELIEILS/DIRLLRLRYFSTYWQTRHEE/RVR/TRVT

Estimated binding specificities ?

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# IC=22.767 IC/col=0.465 n_of_columns=49

specificity:

A |   0  11  96   5  24  24  24  24   5   0  96  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24   8  24   1   0   0  96   5  93  69   0   0   0   3  24  24   1   0
C |   0   9   0   3  24  24  24  24  12   0   0  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24   9  24   1   0   0   0  10   1  11   0   0   0   0  24  24  90   0
G |  96   9   0  83  24  24  24  24   5   0   0  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24   3  24   4  96   0   0   5   1   9   0  96  96  92  24  24   4   0
T |   0  67   0   5  24  24  24  24  74  96   0  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  76  24  90   0  96   0  76   1   7  96   0   0   1  24  24   1  96

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updated Mon Dec 16 03:58:18 2024