8h40_AEGXY : 3D-footprint complex

Interface of input file ?

structure name	CRYO-EM STRUCTURE OF THE TRANSCRIPTION ACTIVATION COMPLEX NTCA-TAC
experiment	NMR
structural superfamily	cAMP-binding domain-like;"Winged helix" DNA-binding domain;
reference complex	8h40_X
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8h40_A interface=149,151,165,166,220,223,390, afllpdlieiqrssfrwfleeglieelnsfspitdytgklelhflghnyklkepkysveeakrrdstyavqmyvptrllnketgdikeqevfigdlplmtdrgtfiingaervivnqivrspgvyykseidkngrrtysaslipnrgaWlKfetdrndlvwvriDKtrklsaqvllkalglsdneifdalrhpeyfqktiekegqfseeealmelyrklRpgEpptvlggqqlldsrffdpkrydlgrvgryklnkklrlsvpdtvrvltsgdilaavdylinleydigsiddidhlgnrrvrsvgellqnqvrvglnrleriirermtvsdaevltpaslvnpkplvaaikeffgssqlsqfmdqtnplaelthkrrlsalgpggltrEragfavrdihpshygricpietpegpnagligslatharvnqygfletpfrpvengrvrfdqpaaymtadeeddlrvapgdipvdengyiigpqvpvryrqefstttpeqvdyvavspvqivsvatsmipflehddanralmgsnmqrqavpllkperplvgtgleaqgardsgmvivsrtdgdvvyvdateirvrvsgqlptasgkstdngqltsqkgqeirytvskyqrsnqdtclnqkplvrigervvagqvladgssteggelalgqnivvaympwegynyedailiserlvqddiytsihiekyeiearqtklgpeeitreipnvgedalrqldeqgiirigawveagdilvgkvtpkgesdqppeekllraifgekardvrdnslrvpngekgrvvdvrlftreqgdelppganmvvrvyvaqkrkiqvgdkmagrhgnkgiisrilpiedmpylpdgspvdivlnplgvpsrmnvgqvfecllgwaghtlgvrfkitpfdemygeessrrivhgklqeardetgkdwvynpddpgkimvydgrtgeafdrpvtigvaymlklvhlvddkiharstgpyslvtqqplggkaqqggqrfgemevwaleafgaaytlqelltvksddmqgrnealnaivkgkaiprpgtpesfkvlmrelqslgldiavhkvetqadgssldv > 8h40_E interface= tnqfdyvkiglasperirqwgertlpngqvvgevtkpetinyrtlkpemdglfcerifgpakdwechcgkykrvrhrgivcercgvevtesrvrrhrmgyiklaapvahvwylkgipsyisilldmplrdveqivyfnsyvvlspgnaEtLtykqllsedqwleIEdqiysedsqlqgvevgigaeallrlladinleqeaeslreeigsakgqkraklIkrLrvidnfiatgskpewmvmtvipvippdlrpmvqldggrfatsdlndlyrrvinrnnrlarlqeilapeiivrnekrmlqeavdalidngrrgrtvvgannrplkslsdiiegkqgrfrqnllgkrvdysgrsvivvgpklkihqcglpremaielfqpfvinrlirSgmvnnikaakklisrndpsvwdvleevieghpvmlnraptlhrlgiqafepilvegraiqlhplvcpafnadfdgdqmavhvplslesqaearllmlasnnilspatgrpiitpsqdmvlgayyltaenpgatkgagkyfaslddvimafqqeqidlhayvyvrfdgdvesdqpdtepvkvttnedgsrtvlykyrrvredaqgnvisqyiyttpgrviynkaiqealas > 8h40_G interface=4,6,7,10,18,88,89,100,128,130,131,132,133,136,140,143,144,158,161,287, yteDsIRlyLqeigrirLlradeeielarkiadllelervrerlseklerdprdsewaeavqlplpafryrlhigrrakdkmvqsnlRLvvsiakkymnRglsfqdliqegslgliraaekfdhekgYkFSTYatWwirQaiTRaiadqsrtirlpvHlyEtisrikkttkllsqemgrkpteeeiatrmemtieklrfiaksaqlpisletpigkeedsrlgdfiesdgetpedqvsknllredlekvldslsprerdvlrlryglddgrmktleeigqifnvtrErirqieakalrklrhpnrnsvlkeyir > 8h40_X interface=163,166,168, vetfernktiffpgdpaervyfllkgavklsrvyeageeitvallrensvfgvlslltgnksdrfyhavaftpvellsapieqveqalkenpelsmlmlrglssrilqtemmietlahrdmgsrlvsfllilcrdfgvpcadgitidlklshqaiaeaigstRvtVtRllgdlrekkmisihkkkitvhkpvtlsr > 8h40_Y interface=162,163,164,167, vetfernktiffpgdpaervyfllkgavklsrvyeageeitvallrensvfgvlslltgnksdrfyhavaftpvellsapieqveqalkenpelsmlmlrglssrilqtemmietlahrdmgsrlvsfllilcrdfgvpcadgitidlklshqaiaeaigsTRVtvTrllgdlrekkmisihkkkitvhkpvtlsr
interface signature	WKDKREE/ELIEILS/DIRLLRLRYFSTYWQTRHEE/RVR/TRVT

Estimated binding specificities ?

contact

# IC=23.049 IC/col=0.470 n_of_columns=49

specificity:

A |   0   9  96   8  24  24  24  24   9   0  96  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24   5  24   0   0   0  96   5  90  69   0   0   0   1  24  24   1   0
C |   0   9   0   7  24  24  24  24   6   0   0  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24   7  24   0   0   0   0   3   1  11   0   0   0   0  24  24  93   0
G |  96  11   0  76  24  24  24  24   5   0   0  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24   5  24   2  96   0   0   7   4   9   0  96  96  94  24  24   1   0
T |   0  67   0   5  24  24  24  24  76  96   0  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  79  24  94   0  96   0  81   1   7  96   0   0   1  24  24   1  96

scan!

home
updated Thu Sep 12 02:12:50 2024