8i87_AB : 3D-footprint complex

structure name	CRYO-EM STRUCTURE OF TIR-APAZ/AGO-GRNA-DNA COMPLEX
experiment	NMR
structural superfamily	Toll/Interleukin receptor TIR domain;Ribonuclease H-like;
reference complex	8ffi_E 8ffi_L
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8i87_A interface=260,355,359, rnkifishatpddndftrwlalkliglgyevwcdilfldkgvdfwsniekviredtckfllvsssysnqregvlkelavaakvkkqlkddkfiiplaideqlsyddinidivrlnaidfkmswarglkdileafekqkvpkevasksnllyqqiflhdksviekeeiydsnwlsilsfpeelrfheynwmlpkrfdvreltfpavryknylctfawaydftyhlpktetyhksktiripteeilsgsydsnfirnaeckRlivqllnkafelrmkdkevqeyemsnktaywlekgklekdkfektmlvgkqkdknwhfaisgasklypfpvlmisshifftadgkklidsssvqHssrRrqgknwwnntwrtkllafikylsdddtsfylemeekvfvsnepvkfkgnvsyni > 8i87_B interface=205,208,211,288, mkeliyieepkilfahgqkctdardglalfgplnnlygiksgvigtkqglkifrdyldhiqkpiynsnsitrpmfpgfeavfdckwestgitfkevtnedigkflynssthkrtydlvslfidkiisanknedenvdvwfvivpdeiykycrpnsvlpkenydaqfhdqfkarllkhtiptqifrestlawrdfknafglpirdFskIegHlawtistaafykaggkpwklsdvrngvcylglvykkveksknprnaccaaqmfldngdgtvfkgevgpwynpkngqYhlepkeakallsqslqsykeqigeypkevfihaktrfnhqewdaflevtpketnlvgvtisktkplklyktegdytilrgnayvvnersaflwtvgyvpkiqtalsmevpnplfieinkgeadikqvlkdilsltklnynacifadgepvtlrfadkigeiltastdiktpplafkyyi
interface signature	RHR/FIHY

Estimated binding specificities ?

contact

# IC=5.766 IC/col=0.412 n_of_columns=14

specificity:

A |   0  54  24  24  16  24  24  24  24  96   0  24  24   0
C |  96  16  24  24  54  24  24  24  24   0  96  24  24  96
G |   0  13  24  24  13  24  24  24  24   0   0  24  24   0
T |   0  13  24  24  13  24  24  24  24   0   0  24  24   0

scan!

home
updated Thu Sep 12 02:48:37 2024