8i87_OT : 3D-footprint complex

structure name	CRYO-EM STRUCTURE OF TIR-APAZ/AGO-GRNA-DNA COMPLEX
experiment	NMR
structural superfamily	Toll/Interleukin receptor TIR domain;Ribonuclease H-like;
reference complex	8ffi_E 8ffi_L
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8i87_O interface=261,356,360, nkifishatpddndftrwlalkliglgyevwcdilfldkgvdfwsniekviredtckfllvsssysnqregvlkelavaakvkkqlkddkfiiplaideqlsyddinidivrlnaidfkmswarglkdileafekqkvpkevadasksnllyqqiflhdksviekeeiydsnwlsilsfpeelrfheynwmlpkrfdvreltfpavryknylctfawaydftyhlpktetyhksktiripteeilsgsydsnfirnaeckRlivqllnkafelrmkdkevqeyemsnktaywlekgklekdkfektmlvgkqkdknwhfaisgasklypfpvlmisshifftadgkklidsssvqHssrRrqgknwwnntwrtkllafikylsdddtsfylemeekvfvsnepvkfkgnvsyni > 8i87_T interface=72,249,290,397, mkeliyieepkilfahgqkctdardglalfgplnnlygiksgvigtkqglkifrdyldhiqkpiynsnsitRpmfpgfeavfdckwestgitfkevtnedigkflynssthkrtydlvslfidkiisanknedenvdvwfvivpdeiykycrpnsvlpkemvnydaqfhdqfkarllkhtiptqifrestlawrdfknafglpirdfskieghlawtistaafykaggkpwklsdvrngvcylglvykKveksknprnaccaaqmfldngdgtvfkgevgpwynpkngqYhlepkeakallsqslqsykeqigeypkevfihaktrfnhqewdaflevtpketnlvgvtisktkplklyktegdytilrgnayvvnersaflwtvgyvpkiqtalsMevpnplfieinkgeadikqvlkdilsltklnynacifadgepvtlrfadkigeiltastdiktpplafkyyi
interface signature	RHR/RKYM

Estimated binding specificities ?

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# IC=3.142 IC/col=0.286 n_of_columns=11

specificity:

A |   0  24  24  24  13  24  24  24  24  96  13
C |  96  24  24  24  57  24  24  24  24   0  54
G |   0  24  24  24  13  24  24  24  24   0  13
T |   0  24  24  24  13  24  24  24  24   0  16

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updated Thu Sep 12 02:49:00 2024