8ipp_B : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE COMPLEX BETWEEN AN ANKYRIN AND A PARALLEL G- QUADRUPLEX (DARPin protein 2E4)
reference	Liew et al. J.Am.Chem.Soc. 146 13709 2024
source	synthetic construct
experiment	X-ray (resolution=2.01, R-factor=?)
structural superfamily	Ankyrin repeat;
sequence family	Ankyrin repeat;
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8ipp_B interface=13,14,34,36,38,43,46,47, gsdlgkklleaaRAgqddevrilmangadvnakDrYgNtplhLaaYMghleivevllkygadvnamdhwgrtplhlaasrghldivevllkhgadvnaqdkfgktafdisidngnedlaeilqkln
interface signature	RADYNLYM

Estimated binding specificities ?

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# IC=5.764 IC/col=0.443 n_of_columns=13

specificity:

A |   0  24  24  24   0  24  24   0  24  24  24   9   0
C |   0  24  24  24   0  24  24   0  24  24  24   9   0
G |  96  24  24  24  96  24  24  96  24  24  24  67   0
T |   0  24  24  24   0  24  24   0  24  24  24  11  96

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updated Wed Dec 18 18:28:40 2024