8j7s_EF : 3D-footprint complex

structure name	STRUCTURE OF THE SPARTA COMPLEX
experiment	NMR
structural superfamily	Toll/Interleukin receptor TIR domain;Ribonuclease H-like;
reference complex	8ffi_E 8ffi_L
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8j7s_E interface=195,235,276,383, mkeliyieepkilfahgqkctdardglalfgplnnlygiksgvigtkqglkifrdyldhiqkpiynsnsitrpmfpgfeavfdckwestgitfkevtnedigkflynssthkrtydlvslfidkiisanknedenvdvwfvivpdeiykycrqfhdqfkarllkhtiptqifrestlawrdfknafglpirdfsKieghlawtistaafykaggkpwklsdvrngvcylglvykKveksknprnaccaaqmfldngdgtvfkgevgpwynpkngqYhlepkeakallsqslqsykeqigeypkevfihaktrfnhqewdaflevtpketnlvgvtisktkplklyktegdytilrgnayvvnersaflwtvgyvpkiqtalsMevpnplfieinkgeadikqvlkdilsltklnynacifadgepvtlrfadkigeiltastdiktpplafkyy > 8j7s_F interface=263,358,362,367, mrnkifishatpddndftrwlalkliglgyevwcdilfldkgvdfwsniekviredtckfllvsssysnqregvlkelavaakvkkqlkddkfiiplaideqlsyddinidivrlnaidfkmswarglkdileafekqkvpkevadasksnllyqqiflhdksviekeeiydsnwlsilsfpeelrfheynwmlpkrfdvreltfpavryknylctfawaydftyhlpktetyhksktiripteeilsgsydsnfirnaeckRlivqllnkafelrmkdkevqeyemsnktaywlekgklekdkfektmlvgkqkdknwhfaisgasklypfpvlmisshifftadgkklidsssvqHssrRrqgkNwwnntwrtkllafikylsdddtsfylemgseekvfvsnepvkfkgnvsyni
interface signature	KKYM/RHRN

Estimated binding specificities ?

contact

# IC=8.532 IC/col=0.502 n_of_columns=17

specificity:

A |  96   0  24  24   4  24  24  24   2   4  24  18  24   0  24  92   0
C |   0   0  24  24  18  24  24  24   4  82  24   6  24  96  24   4   6
G |   0  96  24  24  13  24  24  24  86   4  24  59  24   0  24   0   4
T |   0   0  24  24  61  24  24  24   4   6  24  13  24   0  24   0  86

scan!

home
updated Mon Dec 16 05:13:27 2024