Interface of input file ?

interface graph
legend  pdf

footprint
legend

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameCRYO-EM STRUCTURE OF NUCLEOSOME CONTAINING ARABIDOPSIS THALIANA HISTONES
experimentNMR
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4; Histonelike transcription factor CBF/;
multimeric complexes8j91_ABCDEFGH
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
  
  ----RA----RA          +-----------------------------6a5l_g    
                     +-19  
  ----RG------       !  +-----------------------------5x0y_G    
                     !  
  ----RA------       !                                                  +1zla_C    
                     !                            +---------------------3 
  ----RG------       !                            !                     +8jla_C    
                     !                          +-8 
  ----RC------       !                          ! !                      +7on1_c    
                     !                          ! +----------------------1 
  ----RG------       !                          !                        +8ox0_C    
                     !                          !  
  ----RT------       !                       +-10              +----------7kbd_C    
                     !                       !  ! +------------5 
  ------RA----       !                       !  ! !            +----------6g0l_D    
                     !                       !  ! ! 
  ----RC------       !                       !  ! !                      +7xyf_B    
                     !                       !  +-9                   +--2 
  --------KG--       !                       !    !          +--------4  +7nkx_f    
                   -20                    +-11    !          !        ! 
  LA--RG------       !                    !  !    !     +----6        +---7unc_a    
                     !                    !  !    !     !    ! 
  ----RT------       !                    !  !    +-----7    +------------8grq_A    
                     !                 +-12  !          ! 
  LC--RT------       !                 !  !  !          +-----------------8hr1_E    
                     !                 !  !  !  
  IT----------       !              +-13  !  +---------------------------3wkj_D    
                     !              !  !  !  
  LT--RC------       !              !  !  +---------------------------3kwq_E    
                     !           +-14  !  
  ----RG------       !           !  !  +---------------------------6iy2_A    
                     !        +-15  !  
  --KT--------   L   !        !  !  +---------------------------7cvo_A    
                     !     +-16  !  
  ----RG------       !     !  !  +---------------------------7ccr_A    
                     !  +-17  !  
  LT--RC------       !  !  !  +---------------------------4xzq_E    
                     +-18  !  
  ----RT------          !  +----------------------------7zs9_e    
                        !  
  ----RG------          +----------------------------7y7i_E    
                   

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updated Wed Dec 18 18:33:19 2024