8j91_C : 3D-footprint complex

Interface of input file ?

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.

Dendrogram of similar interfaces ?

matrix format

structure name	CRYO-EM STRUCTURE OF NUCLEOSOME CONTAINING ARABIDOPSIS THALIANA HISTONES
experiment	NMR
structural superfamily	Histone-fold;
sequence family	Core histone H2A/H2B/H3/H4; Histonelike transcription factor CBF/;
multimeric complexes	8j91_ABCDEFGH
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8j91_C interface=28, tsrsskaglqfpvgriarflkngkyatRvgagapvylaavleylaaevlelagnaardnkktrivprhiqlavrndeelskllgdvtiang

  
  ----RT--          +-----------------------------7kbd_C    
                    !  
  ----RC--          !                                     +7xyf_B    
                    !                                  +--1 
  ------KG          !                 +----------------2  +7nkx_f    
                    !                 !                ! 
  LA--RG--          !              +--3                +---7unc_a    
                    !              !  ! 
  IT------          !            +-4  +--------------------3wkj_D    
                    !            ! ! 
  LT--RC--       +-11          +-5 +-----------------------3kwq_E    
                 !  !          ! ! 
  ----RG--       !  !        +-6 +------------------------6iy2_A    
                 !  !        ! ! 
  --KT----   L   !  !      +-7 +-------------------------7cvo_A    
                 !  !      ! ! 
  ----RG--       !  !    +-8 +-------------------------7ccr_A    
               -12  !    ! ! 
  LT--RC--       !  !  +-9 +--------------------------4xzq_E    
                 !  !  ! ! 
  ----RT--       !  +-10 +--------------------------7zs9_e    
                 !     !  
  ----RG--       !     +---------------------------7y7i_E    
                 !  
  ----RC--       +-----------------------------7on1_c

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updated Sat Sep 14 11:06:09 2024