8jfu_BD : 3D-footprint complex

structure name	ACRIIA15 IN COMPLEX WITH PALINDROMIC DNA SUBSTRATE
reference	Deng et al. 'To ? ? ?
experiment	X-ray (resolution=3.15, R-factor=?)
structural superfamily	lambda repressor-like DNA-binding domains;
reference complex	8jg9_F
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8jfu_B interface=17,26,27,28,29,31,32,37,38, smrktierllnselssNsiavrtgvSQAViSKlrngKKelgnltlnsaeklfeyqkemekvdtwivyrgrtadmnksyiaegstyeevynnfvdkygydvldediyeiqllkkngenlddydvdsdginnydkldefresdyvdledydyrelfensssqvyyhefeithe > 8jfu_D interface=17,26,27,28,29,31,32,38, smrktierllnselssNsiavrtgvSQAViSKlrngkKelgnltlnsaeklfeyqkemekvdtwivyrgrtadmnksyiaegstyeevynnfvdkygydvldediyeiqllkkngenlddydvdsdginnydkldefresdyvdledydyrelfensssqvyyhefeithe
interface signature	NSQAVSKKK/NSQAVSKK

Estimated binding specificities ?

readout + contact

# IC=10.112 IC/col=0.632 n_of_columns=16

specificity:

A |   8  96   6   0  90  24  24  24  24  24  24   0   0  76   0  78
C |   6   0   6   0   6  24  24  24  24  24  24   0  96   6   0   6
G |   6   0   8  96   0  24  24  24  24  24  24   7   0   6   0   6
T |  76   0  76   0   0  24  24  24  24  24  24  89   0   8  96   6

scan!

home
updated Mon Dec 16 05:34:27 2024