8jg9_ACF : 3D-footprint complex

structure name	CRYO-EM STRUCTURE OF THE SACAS9-SGRNA-ACRIIA15-PROMOTER DNA DIMER
experiment	NMR
structural superfamily	lambda repressor-like DNA-binding domains;
reference complex	7vw3_A 8jg9_F
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8jg9_A interface= mkrnyilgldigitsvgygiidyetrdvidagvrlfkeanvennegrrskrgarrlkrrrrhriqrvkkllfdynlltdhselsginpyearvkglsqklseeefsaallhlakrrgvhnvneveedtgnelstkeqisrnskaleekyvaelqlerlkkdgevrgsinrfktsdyvkeakqllkvqkayhqldqsfidtyidlletrrtyyegpgegspfgwkdikewyemlmghctyfpeelrsvkyaynadlynalndlnnlvitrdenekleyyekfqiienvfkqkkkptlkqiakeilvneedikgyrvtstgkpeftnlkvyhdikditarkeiienaelldqiakiltiyqssediqeeltnlnseltqeeieqisnlkgytgthnlslkainlildelwhtndnqiaifnrlklvpkkvdlsqqkeipttlvddfilspvvkrsfiqsikvinaiikkyglpndiiielareknskdaqkminemqkrnrqtnerieeiirttgkenakyliekiklhdmqegkclysleaipledllnnpfnyevdhiiprsvsfdnsfnnkvlvkqeenskkgnrtpfqylsssdskisyetfkkhilnlakgkgrisktkkeylleerdinrfsvqkdfinrnlvdtryatrglmnllrsyfrvnnldvkvksinggftsflrrkwkfkkernkgykhhaedaliianadfifkewkkldkakkvmeneieteqeykeifitphqikhikdfkdykyshrvdkkpnrelindtlystrkddkgntlivnnlnglydkdndklkklinkspekllmyhhdpqtyqklklimeqygdeknplykyyeetgnyltkyskkdngpvikkikyygnklnahlditddypnsrnkvvklslkpyrfdvyldngvykfvtvknldvikkenyyevnskcyeeakklkkisnqaefiasfynndlikingelyrvigvnndllnrievnmidityreylenmndkrppriiktiasktqsikkystdilgnlyevkskkhpqiikkg > 8jg9_C interface=17,26,27,28,31,32, smrktierllnselssNsiavrtgvSQAviSKlrngkkelgnltlnsaeklfeyqkemekvdtwivyrgrtadmnksyiaegstyeevynnfvdkygydvldediyeiqllkkngenlddydvdsdginnydkldefresdyvdledydyrelfensssqvyyhefeithe > 8jg9_F interface=17,26,27,28,29,31,32,38, smrktierllnselssNsiavrtgvSQAViSKlrngkKelgnltlnsaeklfeyqkemekvdtwivyrgrtadmnksyiaegstyeevynnfvdkygydvldediyeiqllkkngenlddydvdsdginnydkldefresdyvdledydyrelfensssqvyyhefeithe
interface signature	/NSQASK/NSQAVSKK

Estimated binding specificities ?

readout + contact

# IC=9.580 IC/col=0.599 n_of_columns=16

specificity:

A |   0  96  12   0  24  24  24  24  24  24  24   0   0  60   0  96
C |  12   0  12   0  24  24  24  24  24  24  24   0  96  12   0   0
G |   0   0  12  96  24  24  24  24  24  24  24   0   0  12   0   0
T |  84   0  60   0  24  24  24  24  24  24  24  96   0  12  96   0

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updated Mon Dec 16 05:34:59 2024