8jg9_ACF : 3D-footprint complex

structure name	CRYO-EM STRUCTURE OF THE SACAS9-SGRNA-ACRIIA15-PROMOTER DNA DIMER
experiment	NMR
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8jg9_A interface= mkrnyilgldigitsvgygiidyetrdvidagvrlfkeanvennegrrskrgarrlkrrrrhriqrvkkllfdynlltdhselsginpyearvkglsqklseeefsaallhlakrrgvhnvneveedtgnelstkeqisrnskaleekyvaelqlerlkkdgevrgsinrfktsdyvkeakqllkvqkayhqldqsfidtyidlletrrtyyegpgegspfgwkdikewyemlmghctyfpeelrsvkyaynadlynalndlnnlvitrdenekleyyekfqiienvfkqkkkptlkqiakeilvneedikgyrvtstgkpeftnlkvyhdikditarkeiienaelldqiakiltiyqssediqeeltnlnseltqeeieqisnlkgytgthnlslkainlildelwhtndnqiaifnrlklvpkkvdlsqqkeipttlvddfilspvvkrsfiqsikvinaiikkyglpndiiielareknskdaqkminemqkrnrqtnerieeiirttgkenakyliekiklhdmqegkclysleaipledllnnpfnyevdhiiprsvsfdnsfnnkvlvkqeenskkgnrtpfqylsssdskisyetfkkhilnlakgkgrisktkkeylleerdinrfsvqkdfinrnlvdtryatrglmnllrsyfrvnnldvkvksinggftsflrrkwkfkkernkgykhhaedaliianadfifkewkkldkakkvmeneieteqeykeifitphqikhikdfkdykyshrvdkkpnrelindtlystrkddkgntlivnnlnglydkdndklkklinkspekllmyhhdpqtyqklklimeqygdeknplykyyeetgnyltkyskkdngpvikkikyygnklnahlditddypnsrnkvvklslkpyrfdvyldngvykfvtvknldvikkenyyevnskcyeeakklkkisnqaefiasfynndlikingelyrvigvnndllnrievnmidityreylenmndkrppriiktiasktqsikkystdilgnlyevkskkhpqiikkg > 8jg9_C interface=17,26,27,28,31,32, smrktierllnselssNsiavrtgvSQAviSKlrngkkelgnltlnsaeklfeyqkemekvdtwivyrgrtadmnksyiaegstyeevynnfvdkygydvldediyeiqllkkngenlddydvdsdginnydkldefresdyvdledydyrelfensssqvyyhefeithe > 8jg9_F interface=17,26,27,28,29,31,32,38, smrktierllnselssNsiavrtgvSQAViSKlrngkKelgnltlnsaeklfeyqkemekvdtwivyrgrtadmnksyiaegstyeevynnfvdkygydvldediyeiqllkkngenlddydvdsdginnydkldefresdyvdledydyrelfensssqvyyhefeithe
interface signature	/NSQASK/NSQAVSKK

Estimated binding specificities ?

readout + contact

# IC=9.405 IC/col=0.588 n_of_columns=16

specificity:

A |   0  96  10   0  96  24  24  24  24  24  24  24   0  64   0  74
C |   0   0  10   0   0  24  24  24  24  24  24  24  96  10   0  10
G |   0   0  10  96   0  24  24  24  24  24  24  24   0  10   0  10
T |  96   0  66   0   0  24  24  24  24  24  24  24   0  12  96   2

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updated Thu Sep 12 03:39:39 2024