interface graph thumbnail
legend  pdf

structure nameCRYSTAL STRUCTURE OF THE DIOXYGENASE CCTET FROM COPRINOPSIS CINEREA BOUND TO 12BP 5-METHYLCYTOSINE (5MC) CONTAINING DUPLEX DNA
(2OGFeDO JBP1TET oxygenase domain-containing protein)
referenceZhang et al. 'Nucleic 52 3886 2024
sourceCoprinopsis cinerea (strain Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003) / Coprinopsis cinerea (strain Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003)
experimentX-ray (resolution=2.30, R-factor=0.188)
multimeric complexes7w5p_AH 7w5p_DG
reference complex7w5p_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureRPVHE

Estimated binding specificities ?

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# IC=2.917 IC/col=0.729 n_of_columns=4 specificity:   
A |  60  12   0   0
C |  12  12  84   0
G |  12  12   0  96
T |  12  60  12   0
scan!

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updated Tue Dec 17 18:11:58 2024