8jpx_A : 3D-footprint complex

structure name	CRYO-EM STRUCTURE OF PFAGO-GUIDE DNA-TARGET DNA COMPLEX
experiment	NMR
structural superfamily	Ribonuclease H-like;PAZ domain;
sequence family	Piwi domain;
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8jpx_A interface=42,55,178,286,290,509,513,525,526,529,658,686,732, mkaivvinlvkinkkiipdkiyvyrlfndpeeelqkegysiYrlayenvgividPenliiattkeleyegefipegeisfselrndyqsklvlrllkengigeyelskllrkfrkpktfgdykvipsvemsvikhdedfylvihiihqiqsmktlwelvnkdpkeleeflmthkenlMlkdiasplktvykpcfeeytkkpkldhnqeivkywynyhierywntpeaklefyrkfgqvdlkqpailakfaskikknknykiyllpqlvvptynaeqlesdvakeiLeytKlmpeerkellenilaevdsdiidkslseievekiaqelenkirvrddkgnsvpisqlnvqksqlllwtnysrkypvilpyevpekfrkireipmfiildsglladiqnfatnefrelvksmyyslakkynslakkarstneiglpfldfrgkekvitedlnsdkgiievveqvssfmkgkelglafiaarnklssekfeeikrrlfnlnvisqvvnedTlknKrdkydrnrldlFVrhNllfqvlsklgvkyyvldyrfnydyiigidvapmkrsegyiggsavmfdsqgyirkivpikigeqrgesvdmneffkemvdkfkefnikldnkkilllrdgritnneeeglkyisemfdievvtmdvikNhpvrafanmkmyfnlggaiyliphklkQakgtpipiklakkriikngkvekqsitrqdvldifiltrlnygsiSadmrlpapvhyahkfanairnewkikeeflaegflyfv
interface signature	YPMLKTKFVNNQS

Estimated binding specificities ?

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# IC=4.126 IC/col=0.295 n_of_columns=14

specificity:

A |   0  24  24  24  24  24  24  24  24  76   9   9  24   0
C |  96  24  24  24  24  24  24  24  24  11  69  57  24  96
G |   0  24  24  24  24  24  24  24  24   0   9  11  24   0
T |   0  24  24  24  24  24  24  24  24   9   9  19  24   0

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updated Wed Dec 18 18:46:23 2024