Interface of input file ?

interface graph
legend  pdf

footprint
legend

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameCOMPLEX OF DDM1-NUCLEOSOME(H2A) COMPLEX WITH DDM1 BOUND TO SHL2
experimentNMR
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4; Histonelike transcription factor CBF/;
multimeric complexes8whb_ABCDEFGH
redundant complexes8wh5_C 8wh8_G 8wh9 8wha 8whb
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
  
  ------RG------             +-----------------------------5x0y_G    
                          +-17  
  ------RG------          !  +-----------------------------8jla_C    
                          !  
  ------RA------          !                               +1zla_C    
                          !        +----------------------3 
  ------RG------          !        !                      +8ox0_C    
                          !      +-9 
  ------RT------          !      ! !                      +7kbd_C    
                          !      ! +----------------------1 
  ------RA----RA          !  +--10                        +6a5l_g    
                       +-18  !   !  
  ----KT--------   L   !  !  !   !                   +----7cvo_A    
                       !  !  !   +-------------------7 
  --------RA----       !  !  !                       +----6g0l_D    
                       !  !  !  
  ------RC------       !  !  !                                       +7xyf_B    
                       !  !  !                                   +---4 
  ----------KG--       !  !  !                                   !   +7nkx_f    
                       !  !  !                       +-----------6 
  LA----RG------       !  !  !                       !           !    +7unc_a    
                       !  +-16                       !           +----2 
  ------RT------       !     !              +--------8                +8grq_A    
                       !     !              !        ! 
  ------RT------     -19     !              !        !               +7zs9_e    
                       !     !           +-11        +---------------5 
  LC----RT------       !     !           !  !                        +8hr1_E    
                       !     !        +-12  !  
  --LT--RC------       !     !        !  !  +-------------------------3kwq_E    
                       !     !     +-13  !  
  ------RG------       !     !     !  !  +-------------------------6iy2_A    
                       !     !  +-14  !  
  LT----RC------       !     !  !  !  +--------------------------4xzq_E    
                       !     +-15  !  
  ------RG------       !        !  +--------------------------7ccr_A    
                       !        !  
  ------RG------       !        +---------------------------7y7i_E    
                       !  
  --IT----------       +-----------------------------3wkj_D    
                     

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updated Wed Dec 18 18:52:18 2024