Interface of input file ?

interface graph
legend  pdf

footprint
legend

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameCOMPLEX OF DDM1-NUCLEOSOME(H2A) COMPLEX WITH DDM1 BOUND TO SHL2
experimentNMR
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4; Histonelike transcription factor CBF/;
multimeric complexes8whb_ABCDEFGH
redundant complexes8wh5_C 8wh8_G 8wh9 8wha 8whb
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
  
  ------RA------                                   +1zla_C    
                                    +--------------4 
  ------RG------                    !              +8ox0_C    
                           +-------10  
  ------RT------           !        !                +7kbd_C    
                           !        ! +--------------1 
  ------RG------       +--12        +-9              +5x0y_G    
                       !   !          ! 
  ------RA----RA       !   !          +--------------6a5l_g    
                       !   !  
  ------RG------       !   +-----------------------8jla_C    
                       !  
  ----KT--------   L   !                        +----------------7cvo_A    
                       !                 +-----11  
  --IT----------       !                 !      !                +3wkj_D    
                       !                 !      +----------------2 
  --------RA----       !                 !                       +6g0l_D    
                       !                 !  
  ------RC------       !              +-13                       +7xyf_B    
                       !              !  !                   +---6 
  ----------KG--       !              !  !                   !   +7nkx_f    
                     -19              !  !          +--------7 
  LA----RG------       !              !  !          !        !   +7unc_a    
                       !              !  !          !        +---5 
  LC----RT------       !           +-14  +----------8            +8hr1_E    
                       !           !  !             ! 
  --LT--RC------       !           !  !             !            +3kwq_E    
                       !           !  !             +------------3 
  ------RT------       !        +-15  !                          +8grq_A    
                       !        !  !  !  
  ------RG------       !        !  !  +--------------------------6iy2_A    
                       !     +-16  !  
  LT----RC------       !     !  !  +--------------------------4xzq_E    
                       !  +-17  !  
  ------RG------       !  !  !  +--------------------------7ccr_A    
                       +-18  !  
  ------RT------          !  +--------------------------7zs9_e    
                          !  
  ------RG------          +---------------------------7y7i_E    
                     

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updated Mon Aug 4 01:37:40 2025