8kcb_A : 3D-footprint complex

Interface of input file ?

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.

Dendrogram of similar interfaces ?

matrix format

structure name	COMPLEX OF DDM1-NUCLEOSOME(H2A) COMPLEX WITH DDM1 BOUND TO SHL2
experiment	NMR
structural superfamily	Histone-fold;
sequence family	Core histone H2A/H2B/H3/H4; Histonelike transcription factor CBF/;
multimeric complexes	8whb_ABCDEFGH
redundant complexes	8wh5_C 8wh8_G 8wh9 8wha 8whb
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8kcb_A interface=27,62, srsskaglqfpvgriarflkagkyaeRvgagapvylaavleylaaevlelagnaardnkktRivprhiqlavrndeelskllgdvtian

  
  ------RT--            +-----------------------------7kbd_C    
                      +-9 
  ----KT----   L   +-10 +-----------------------------7cvo_A    
                   !  !  
  --IT------       !  +-----------------------------3wkj_D    
                   !  
  ------RC--       !                                 +7xyf_B    
                   !                              +--1 
  --------KG       !             +----------------2  +7nkx_f    
                   !             !                ! 
  LA----RG--       !          +--3                +---7unc_a    
                 -11          !  ! 
  --LT--RC--       !        +-4  +--------------------3kwq_E    
                   !        ! ! 
  ------RG--       !      +-5 +-----------------------6iy2_A    
                   !      ! ! 
  LT----RC--       !    +-6 +------------------------4xzq_E    
                   !    ! ! 
  ------RG--       !  +-7 +-------------------------7ccr_A    
                   !  ! ! 
  ------RT--       +--8 +--------------------------7zs9_e    
                      ! 
  ------RG--          +--------------------------7y7i_E

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updated Sat Sep 14 11:23:30 2024