3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameCOMPLEX OF DDM1-NUCLEOSOME(H2A) COMPLEX WITH DDM1 BOUND TO SHL2
experimentNMR
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4;
redundant complexes8kcc
links to other resourcesNAKB PDBSum PDIdb DNAproDB
  
  IT----------                      +-----------------------------3wkj_D    
                                 +-14  
  ------RA----                +-15  +-----------------------------6g0l_D    
                              !  !  
  ----RG------             +-16  +-----------------------------5x0y_G    
                           !  !  
  ----RG------          +-17  +-----------------------------8jla_C    
                        !  !  
  ----RA----RA       +-18  +-----------------------------6a5l_g    
                     !  !  
  ----RG------       !  +-----------------------------8ox0_C    
                     !  
  ----RA------       !                 +------------------------1zla_C    
                     !                 ! 
  ----RC------       !                 !                       +7xyf_B    
                     !                 !                   +---3 
  --------KG--       !                 !                   !   +7nkx_f    
                     !               +-7           +-------4 
  ----RG------       !               ! !           !       !   +7unc_a    
                     !               ! !           !       +---2 
  ----RT------       !               ! !        +--5           +8hr1_E    
                   -19               ! !        !  ! 
  ----RG------       !             +-8 !        !  !            +7ccr_A    
                     !             ! ! +--------6  +------------1 
  ----RT------       !             ! !          !               +8grq_A    
                     !             ! !          ! 
  ----RT------       !           +-9 !          +---------------7zs9_e    
                     !           ! ! ! 
  ----RT------       !           ! ! +------------------------7kbd_C    
                     !        +-10 ! 
  ----RC------       !        !  ! +--------------------------3kwq_E    
                     !     +-11  !  
  ----RG------       !     !  !  +--------------------------6iy2_A    
                     !  +-12  !  
  --KT--------   L   !  !  !  +---------------------------7cvo_A    
                     +-13  !  
  ----RC------          !  +---------------------------4xzq_E    
                        !  
  ----RG------          +---------------------------7y7i_E    
                   

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updated Wed Dec 18 18:53:41 2024