3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameCOMPLEX OF DDM1-NUCLEOSOME(H2A) COMPLEX WITH DDM1 BOUND TO SHL2
experimentNMR
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4;
redundant complexes8kcc
links to other resourcesNAKB PDBSum PDIdb DNAproDB
  
  IT--------                                  +------3wkj_D    
                                   +----------5 
  ----RC----                       !          +------7yqk_C    
                            +------8 
  ----RA--RA                !      !                 +6a5l_g    
                            !      +-----------------1 
  ----RG----                !                        +8upf_G    
                            !  
  ----RT----                !                        +7kbd_C    
                         +-11     +------------------4 
  ----RG----             !  !     !                  +8rbx_V    
                         !  !   +-9 
  ------KG--             !  !   ! !                  +7nkx_f    
                         !  !   ! ! +----------------2 
  ----RA----             !  !   ! +-7                +7e9c_F    
                         !  !   !   ! 
  ----RC----          +-12  +--10   +----------------7ux9_E    
                      !  !      !  
  ----RG----          !  !      !                    +7unc_a    
                      !  !      !     +--------------3 
  ----RT----          !  !      +-----6              +6px1_A    
                   +-13  !            ! 
  ----RT----       !  !  !            +--------------7zs9_e    
                   !  !  !  
  ----RG----     -14  !  +---------------------------7ccr_A    
                   !  !  
  ----RG----       !  +-----------------------------7y7i_E    
                   !  
  --KT------   L   +-----------------------------7cvo_A    
                 

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updated Sun Jan 11 00:42:45 2026