3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameCOMPLEX OF DDM1-NUCLEOSOME(H2A) COMPLEX WITH DDM1 BOUND TO SHL2
experimentNMR
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4;
redundant complexes8kcc
links to other resourcesNAKB PDBSum PDIdb DNAproDB
  
  IT------          +-----------------------------3wkj_D    
                 +-10  
  ----RT--       !  +-----------------------------7kbd_C    
                 !  
  ----RC--       !                                   +7xyf_B    
                 !                                +--1 
  ------KG       !               +----------------2  +7nkx_f    
                 !               !                ! 
  ----RG--       !            +--3                +---7unc_a    
                 !            !  ! 
  ----RG--     -11          +-4  +--------------------6iy2_A    
                 !          ! ! 
  ----RC--       !        +-5 +-----------------------3kwq_E    
                 !        ! ! 
  --KT----   L   !      +-6 +------------------------7cvo_A    
                 !      ! ! 
  ----RC--       !    +-7 +-------------------------4xzq_E    
                 !    ! ! 
  ----RG--       !  +-8 +-------------------------7ccr_A    
                 !  ! ! 
  ----RT--       +--9 +--------------------------7zs9_e    
                    ! 
  ----RG--          +--------------------------7y7i_E    
               

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updated Sat Sep 14 11:24:38 2024