3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameCOMPLEX OF DDM1-NUCLEOSOME(H2A) COMPLEX WITH DDM1 BOUND TO SHL2
experimentNMR
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4;
redundant complexes8kcc
links to other resourcesNAKB PDBSum PDIdb DNAproDB
  
  ------RA----       +-----------------------------6g0l_D    
                     !  
  IT----------       !                           +------3wkj_D    
                     !                +----------5 
  ----RG------       !            +---8          +------5x0y_G    
                     !            !   ! 
  ----RG------       !         +-11   +-----------------8ox0_C    
                     !         !  !  
  ----RA------       !      +-13  +---------------------1zla_C    
                     !      !  !  
  ----RG------     -19  +--14  +-----------------------8jla_C    
                     !  !   !  
  ----RA----RA       !  !   +------------------------6a5l_g    
                     !  !  
  ----RT------       !  !        +-------------------------7kbd_C    
                     !  !        !  
  ----RC------       !  !        !                          +7xyf_B    
                     !  !        !                       +--3 
  --------KG--       !  !        !              +--------4  +7nkx_f    
                     !  !        !              !        ! 
  ----RG------       !  !        !        +-----6        +---7unc_a    
                     +-18     +-15        !     ! 
  ----RG------          !     !  !        !     !            +7ccr_A    
                        !     !  !      +-9     +------------2 
  ----RT------          !     !  !      ! !                  +8hr1_E    
                        !     !  !   +-10 ! 
  ----RC------          !     !  !   !  ! +------------------4xzq_E    
                        !     !  !   !  !  
  ----RT------          !  +-16  !   !  +--------------------7zs9_e    
                        !  !  !  +--12  
  ----RC------          !  !  !      !                     +3kwq_E    
                        !  !  !      !      +--------------1 
  ----RT------          !  !  !      +------7              +8grq_A    
                        +-17  !             ! 
  ----RG------             !  !             +--------------6iy2_A    
                           !  !  
  --KT--------   L         !  +---------------------------7cvo_A    
                           !  
  ----RG------             +---------------------------7y7i_E    
                   

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updated Mon Aug 4 01:39:02 2025