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interface graphfootprint logointerface matrixatomic interactionsinterface residue numbers

3D-footprint cannot reliably estimate the specificity of 'Nucleic acid-binding proteins', as they bind to single-stranded DNA and thus accumulate more base contacts.

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updated Mon Dec 16 06:53:33 2024

structure name	CONDENSED RPA-DNA NUCLEOPROTEIN FILAMENT
reference	Martinez-Carranza et al. 'Nat 14 2326 2023
experiment	X-ray (resolution=8.24, R-factor=?)
structural superfamily	Nucleic acid-binding proteins;
reference complex	8aas_A 8oej_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8oel_A interface=139,143,150,175,177,192,194,252,253,254,255,260, slmriselypgmdprevnvvgrvlkkyppreytrkdgsvgrvasliiyddsgrarvvlwdakvseyynkievgdvikvldaqvkeslsglpelhinfrariilnpddprvemitrkkikdieagdrfvevrgtiakvyRvltYdacpecKkkvdydeglgvwicpehgevqpikMtIldfglddgtgyirvTlFgddaeellgvspeeiaekikeleesglttkeaarklaedefyniigreivvrgnvieDRFLglilRasswedvdyrreierikeeleklgvm > 8oel_B interface=25,74,76,77,101,106,108, krmpatrlyikdilegyfvksegdFepnylitkyarkvyrakivgtvvrepliaedetygkfqvddgtgviwvLgFRddtkfaklvrkgdlvqvigkiaeWrddkQiLvegvskvhpnmwilhryetlkekiehikkakialeiynqygitakskviaknkgieeellevidelygim > 8oel_D interface=39,139,143,150,175,177,192,194,252,253,254,255,260, slmriselypgmdprevnvvgrvlkkyppreytrkdgsVgrvasliiyddsgrarvvlwdakvseyynkievgdvikvldaqvkeslsglpelhinfrariilnpddprvemitrkkikdieagdrfvevrgtiakvyRvltYdacpecKkkvdydeglgvwicpehgevqpikMtIldfglddgtgyirvTlFgddaeellgvspeeiaekikeleesglttkeaarklaedefyniigreivvrgnvieDRFLglilRasswedvdyrreierikeeleklgvm > 8oel_H interface=25,74,76,77,101,106,108, krmpatrlyikdilegyfvksegdFepnylitkyarkvyrakivgtvvrepliaedetygkfqvddgtgviwvLgFRddtkfaklvrkgdlvqvigkiaeWrddkQiLvegvskvhpnmwilhryetlkekiehikkakialeiynqygitakskviaknkgieeellevidelygim