8olx_AB : 3D-footprint complex

structure name	MUTSBETA BOUND TO (CAG)2 DNA (CANONICAL FORM)
reference	Thieulin-Pardo et al. 'To ? ? ?
experiment	X-ray (resolution=3.10, R-factor=?)
structural superfamily	DNA repair protein MutS, domain III;P-loop containing nucleoside triphosphate hydrolases;
reference complex	8ag6_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8olx_A interface=24,26,27,29,31,50,52,62,64,66,511, evgfvrffqgmpekptttvrlfdRgDFyTaHgedallaarevfktqgviKyMgpagaknlqSvVlSkmnfesfvkdlllvrqyrvevyknrakaskendwylaykaspgnlsqfedilsigvvgvkmsavdgqrqvgvgyvdsiqrklglcefpdndqfsnlealliqigpkecvlpggetagdmgklrqiiqrggiliterkkadfstkdiyqdlnrllkgkkgeqmnsavlpemenqvavsslsavikflellsddsnfgqfelttfdfsqymkldiaavralnlfsqslaallnkcktpqgqrlvnqwikqplmdknrieerlnlveafvedaelrqtlqedllrrfpdlnrlakkfqrqaanlqdcyrlyqginqlpnviqalekhegkhqklllavfvtpltdlrsdfskfqemiettldmdqvenheflvkpsfdpnlselreimndlekkmqstlisaardlgldpgkqikldssfgyyfrvtckeekvlrnnknfstvdiqkNgvkftnskltslneeytknkteyeeaqdaivkeivnissgyvepmqtlndvlaqldavvsfahvsngapvpyvrpailekgqgriilkasrhacvevqdeiafipndvyfekdkqmfhiitgpnmggkstyirqtgvivlmaqigcfvpcesaevsivdcilarvstfmaemletasilrsatkdsliiidelgrgtstydgfglawaiseyiatkigafcmfathfheltalanqiptvnnlhvtaltteetltmlyqvkkgvcdqsfgihvaelanfpkhviecakqkaleleelereqgekiiqeflskvkqmpftemseenitiklkqlkaeviaknnsfvneiisri > 8olx_B interface=29,30,503, ksiytplelqyiemkqqhkdavlcvecgYKyrffgedaeiaarelniychldhnfmtasipthrlfvhvrrlvakgykvgvvkqtetaalkaigdnrsslfsrkltalytkstligedvnptsyllcisenkenvrdkkkgnifigivgvqpatgevvfdsfqdsasrseletrmsslqpvelllpsalseqtealihratsvsvqddrirvermdniyfeyshafqavtefyaisgivnlekpvicslaaiikylkefnlekmlskpenfkqlsskmefmtingttlrnleilqnqtdmktkgsllwvldhtktsfgrrklkkwvtqpllklreinarldavsevlhsessvfgqienhlrklpdierglcsiyhkkcstqefflivktlyhlksefqaiipavnshiqsdllrtvileipellspvehylkilneqaakvgdktelfkdlsdfplikkrkdeiqgvideirmhlqeirkilknpsaqyvtvsgqefmieiKnsavsciptdwvkvgstkavsrfhspfivenyrhlnqlreqlvldcsaewldflekfsehyhslckavhhlatvdcifslakvakqgdycrptvqeerkivikngrhpvidvllqyvpnntdlsedservmiitgpnmggkssyikqvalitimaqigsyvpaeeatigivdgiftrmstfmeeltdtaeiirkatsqslvildelgrgtsthdgiaiayatleyfirdvksltlfvthyppvceleknyshqvgnyhmgflyqitrgiaarsyglnvakladvpgeilkkaahkskeleglintkrkrlkyfaklwtmhnaqdlqkwteefn
interface signature	RDFTHKMSVSN/YKK

Estimated binding specificities ?

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# IC=5.245 IC/col=0.477 n_of_columns=11

specificity:

A |  13  24  24  24  24   0   0  31  24   0   2
C |  13  24  24  24  24  96   0  23  24   0   2
G |  14  24  24  24  24   0  96  21  24   0  88
T |  56  24  24  24  24   0   0  21  24  96   4

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updated Mon Dec 16 07:12:28 2024