8oma_AB : 3D-footprint complex

structure name	MUTSBETA BOUND TO 61BP HOMODUPLEX DNA
reference	Thieulin-Pardo et al. 'To ? ? ?
experiment	X-ray (resolution=3.29, R-factor=?)
structural superfamily	DNA repair protein MutS, domain III;P-loop containing nucleoside triphosphate hydrolases;
reference complex	8ag6_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8oma_A interface=55,79,365,374,375,392,393, sigvvgvkmsqrqvgvgyvdsiqrklglcefpdndqfsnlealliqkecvlpggEtagdmgklrqiiqrggiliterkKadfstkdiyqdlnrllkgkkgeqmnsavlpemenqvavsslsavikflellsddsnfgqfelttfdfsqymkldiaavralnlfqgdttgsqslaallnkcktpqgqrlvnqwikqplmdknrieerlnlveafvedaelrqtlqedllrrfpdlnrlakkfqrqaanlqdcyrlyqginqlpnviqalekhegkhqklllavfvtpltdlrsdfskfqemiettldmdqvenheflvkpsfdpnlselreimndlekkmqstlisaardlgldpgkqikldssaQfgyyfrvtCKeekvlrnnknfstvdiQKngvkftnskltslneeytknkteyeeaqdaivkeivnissgyvepmqtlndvlaqldavvsfahvsngapvpyvrpailekgqgriilkasrhacvevqdeiafipndvyfekdkqmfhiitgpnmggkstyirqtgvivlmaqigcfvpcesaevsivdcilarvgagdsqlkgvstfmaemletasilrsatkdsliiidelgrgtstydgfglawaiseyiatkigafcmfathfheltalanqiptvnnlhvtaltteetltmlyqvkkgvcdqsfgihvaelanfpkhviecakqkaleleefqyeqgekiiqeflskvkqmpftemseenitiklkqlkaeviaknnsfvneiisrikvtt > 8oma_B interface=88,91, mefmtingttlrnleilqnqtdmktkgsllwvldhtktsfgrrklkkwvtqpllklreinarldavsevlhsssvfgqienhlrklpDieRglcsiyhkkcstqefflivktlyhlksefqaiipavnshiqsdllrtvileipellspvehylkilneqaakvgdktelfkdlsdfplikkrkdeiqgvideirmhlqeirkilknpsaqyvtvsgqefmieiknsavsciptdwvkvgstkavsrfhspfivenyrhlnqlreqlvldcsaewldflekfsehyhslckavhhlatvdcifslakvakqgdycrptvqeerkivikngrhpvidvllgeqdqyvpnntdlsedservmiitgpnmggkssyikqvalitimaqigsyvpaeeatigivdgiftrmgaadniykgrstfmeeltdtaeiirkatsqslvildelgrgtsthdgiaiayatleyfirdvksltlfvthyppvceleknyshqvgnyhmgflvsdfvtflyqitrgiaarsyglnvakladvpgeilkkaahkskeleglintkrkrlkyfaklwtmhnaqdlqkwte
interface signature	EKQCKQK/DR

Estimated binding specificities ?

contact

# IC=8.691 IC/col=0.579 n_of_columns=15

specificity:

A |   6  80  96   0   0   6  80  24  24  24   5  24  24  24   0
C |   5   5   0   0  96   5   5  24  24  24   5  24  24  24   5
G |   5   5   0  96   0   5   6  24  24  24  12  24  24  24  91
T |  80   6   0   0   0  80   5  24  24  24  74  24  24  24   0

scan!

home
updated Mon Dec 16 07:13:11 2024