8p0j_ABHI : 3D-footprint complex

structure name	CRYO EM MAP AND MODEL OF THE VACCINIA RNA POLYMERASE INTERMEDIATE PRE- INITIATION OPEN PROMOTER COMPLEX
experiment	NMR
reference complex	7aoh_S 8p0j_I
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8p0j_A interface=213,740,741, aviskvtyslydqkeinatdiiishvkndddigtvkdgrlgamdgalcktcgktelecfghwgkvsiykthivkpefiseiirllnhicihcgllrsrepysddinlkelsghalrrlkdkilskkkscwnsecmqpyqkitfskkkvcfvnklddinvpnsliyqklisihekfwplleihqypanlfytdyfpippliirpaisetneltYllgmivkncnlnadeqviqkavieyddikiisnnttsinlsyitsgknnmirsyivarrkdqtarsvigpstsitvnevgmpayirntltekifvnaftvdkvkqllasnqvkfyfnkrlnqltrirqgkfiknkihllpgdwvevavqeytsiifgrqpslhrynviassirategdtikispgiansqnadfdgdeewmileqnpkavieqsilmypttllkhdihgapvygsiqdeivaayslfriqdlcldevlnilgkygrefdpkgkckfsgkdiytyligekinypgllkdgeiiandvdsnfvvamrhlslagllsdhksnveginfiikssyvfkrylsiygfgvtfkdlrpnstftnkleainvekielikeayakylndvrdgkivplskaleadyvesmlsnltnlnireieehmrqtliddpdnnllkmakagykvnptelmyilgtygqqridgepaetrvlgrvlpyylpdskdpegrgyilnsltkgltgsqyyfsmlvarsqstdivceTSrtgtlarkiikkmedmvvdgygqvvigntlikyaanytkilgsvckpvdliypdesmtwyleisalwnkikqgfvysqkqklakktlapfnflvfvkpttednaikvkdlydmihnviddvrekyfftvsnidfmeyiflthlnpsriritketaitifekfyeklnytlgggtpigiisaqvlsekftqqalssfhtteksgavkqklgfnefnnltnlsknkteiitlvsddisklqsvkinfefvclgelnpnitlrketdkyvvdiivnrlyikraeitelvveymierfisfsvivkewgmetfiedednirftvylnfvepeelnlskfmmvlpgaankgkiskfkipisdytgyddfnqtkklnkmtvelmnlkelgsfdlenvnvypgvwntydifgieaareylceamlntygegfdylyqpcdllasllcasyepesvnkfkfgaastlkratfgdnkallnaalhkksepindnsschffskvpnigtgyykyfidlgllmrmerklsdkissqkikemeetedf > 8p0j_B interface=198,199,200,220,443,444,446,448,450, emdqrlgykflvpdpkagvfyrplhfqyvsysnfilhrlheiltvkrpllsfknnterimieisnvkvtppdyspiiasikgksydalatftvnifkevmtkegisitkissyegkdshlikiplligygnknpldtakylvpnviggvfinkqsvekvginlvekittwpkfrvvkpnsftfsfssvsppnvlptrYRHykisldisqlealnisstkTfitvnivllsqylsrvslefirrslsydmppevvylvnaiidsakritesitdfnidtyindlveaehikqksqltinefkyemlhnflphmnytpdqlkgfymisllrkflycifhtsrypdrdsmvchriltygkyfetlahdelenyignirndimnnhknrgtyavnihvlttpglnhafssllsgkfkksdgsyrthphyswmqnisiprsvgfypdQVkIsKmFsvrkyhpsqylyfcssdvpergpqvglvsqlsvlssitniltseyldlekkiceyirsyykddisyfetgfpitienalvaslnpnmicdfvtdfrrrkrmgffgnlevgitlvrdhmneirinigagrlvrpflvvdngelmmdvcpelesrlddmtfsdiqkefphviemvdieqftfsnvcesvqkfrmmskderkqydlcdfpaefrdgyvasslvginhnsgprailgcaqakqaisclssdirnkidngihlmyperpiviskaletskiaancfgqhvtialmsykginqedgiiikkqfiqrggldivtakkhqveiplenfnnkerdrsnaysklesnglvrlnaflesgdamarnissrtleddfardnqisfdvsekytdmyksrvervqveltdkvkvrvltmkerrpilgdkfttrtsqkgtvayvadetelpydengitpdviinstsifsrktismlieviltaaysakpynnkgenrpvcfpssnetsidtymqfakqcyehsnpklsdeelsdkifcekilydpetdkpyaskvffgpiyylrlrhltqdkatvrcrgkktklirqanegrkrgggikfgemerdcliahgaantitevlkdseedyqdvyvcencgdiaaqikgintclrcsklnlsplltkidtthvskvfltqmnargvkvkldferrppsfykpldkvdlkpsf > 8p0j_H interface=18,19,21,193,196,197,211,213,219,221,299,301,326,327, mdnlftflheiedryarTIfNfhliscdeigdiyglmkerissedmfdnivynkdihpaikklvycdiqltkhiinqntypvfndssqvkcchyfdinsdnsnissrtveifereksslvsyikttnkkrkvnygeikktvhggtnanyfsgkksdeylsttvrsninqpwiktiskrmrvdiinhsivtrgKssILqtieiiftnrtcvKiFkdstmHiIlskdkdekgcihmidklfyvyynlfllfediiqneyfkevanvvnhvltataldeklflikkmaehdvygvsnfkigMfNltfiksldhtvfpslldedskikfFKgkklnivalrsledcinyvtksenmiemmkerstilnsidietesvdrlkelllk > 8p0j_I interface=31,76,194, mfepvpdlnleasvelgevnidqttpmikeAhrskdderklalrfflqrlyfldhreihylfrcvdavkdvtitkKnniivapyialltiaskgckltetmieaffpelynehskkfkfnsqvsiiqeklgyqfgnyhvydfepyystvalairdehssgifnirqesylvsslseityrfylinlksdlvqwSastgavinqmvntvlitvyeklqlviendsqftcslavesklpikllkdrnelftkfinelkktssfkiskrdkdtllkyft
interface signature	YTS/YRHTQVIKF/TINKILKFHIMNFK/AKS

Estimated binding specificities ?

contact

# IC=16.117 IC/col=0.672 n_of_columns=24

specificity:

A |  80  96   0   0   0   5  96  96  24  24  24  65  24  24  24  24  24  24  70   0  96  96  65  96
C |   5   0  96   0   0   5   0   0  24  24  24  10  24  24  24  24  24  24  10   0   0   0  10   0
G |   6   0   0   0   0   5   0   0  24  24  24  10  24  24  24  24  24  24   6   0   0   0  10   0
T |   5   0   0  96  96  81   0   0  24  24  24  11  24  24  24  24  24  24  10  96   0   0  11   0

scan!

home
updated Mon Dec 16 07:47:36 2024