8p0k_ABHI : 3D-footprint complex

structure name	CRYO EM MAP AND MODEL OF THE VACCINIA RNA POLYMERASE INTERMEDIATE PRE- INITIATION OPEN PROMOTER COMPLEX, MODULE 2 OF CAPPING ENZYME MOBILE
experiment	NMR
reference complex	7aoh_S
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8p0k_A interface=740,741, aviskvtyslydqkeinatdiiishvkndddigtvkdgrlgamdgalcktcgktelecfghwgkvsiykthivkpefiseiirllnhicihcgllrsrepysddinlkelsghalrrlkdkilskkkscwnsecmqpyqkitfskkkvcfvnklddinvpnsliyqklisihekfwplleihqypanlfytdyfpippliirpaisetneltyllgmivkncnlnadeqviqkavieyddikiisnnttsinlsyitsgknnmirsyivarrkdqtarsvigpstsitvnevgmpayirntltekifvnaftvdkvkqllasnqvkfyfnkrlnqltrirqgkfiknkihllpgdwvevavqeytsiifgrqpslhrynviassirategdtikispgiansqnadfdgdeewmileqnpkavieqsilmypttllkhdihgapvygsiqdeivaayslfriqdlcldevlnilgkygrefdpkgkckfsgkdiytyligekinypgllkdgeiiandvdsnfvvamrhlslagllsdhksnveginfiikssyvfkrylsiygfgvtfkdlrpnstftnkleainvekielikeayakylndvrdgkivplskaleadyvesmlsnltnlnireieehmrqtliddpdnnllkmakagykvnptelmyilgtygqqridgepaetrvlgrvlpyylpdskdpegrgyilnsltkgltgsqyyfsmlvarsqstdivceTSrtgtlarkiikkmedmvvdgygqvvigntlikyaanytkilgsvckpvdliypdesmtwyleisalwnkikqgfvysqkqklakktlapfnflvfvkpttednaikvkdlydmihnviddvrekyfftvsnidfmeyiflthlnpsriritketaitifekfyeklnytlgggtpigiisaqvlsekftqqalssfhtteksgavkqklgfnefnnltnlsknkteiitlvsddisklqsvkinfefvclgelnpnitlrketdkyvvdiivnrlyikraeitelvveymierfisfsvivkewgmetfiedednirftvylnfvepeelnlskfmmvlpgaankgkiskfkipisdytgyddfnqtkklnkmtvelmnlkelgsfdlenvnvypgvwntydifgieaareylceamlntygegfdylyqpcdllasllcasyepesvnkfkfgaastlkratfgdnkallnaalhkksepindnsschffskvpnigtgyykyfidlgllmrmerklsdkissqkikemeetedf > 8p0k_B interface=198,199,200,220,443,444,446,447, emdqrlgykflvpdpkagvfyrplhfqyvsysnfilhrlheiltvkrpllsfknnterimieisnvkvtppdyspiiasikgksydalatftvnifkevmtkegisitkissyegkdshlikiplligygnknpldtakylvpnviggvfinkqsvekvginlvekittwpkfrvvkpnsftfsfssvsppnvlptrYRHykisldisqlealnisstkTfitvnivllsqylsrvslefirrslsydmppevvylvnaiidsakritesitdfnidtyindlveaehikqksqltinefkyemlhnflphmnytpdqlkgfymisllrkflycifhtsrypdrdsmvchriltygkyfetlahdelenyignirndimnnhknrgtyavnihvlttpglnhafssllsgkfkksdgsyrthphyswmqnisiprsvgfypdQVkISkmfsvrkyhpsqylyfcssdvpergpqvglvsqlsvlssitniltseyldlekkiceyirsyykddisyfetgfpitienalvaslnpnmicdfvtdfrrrkrmgffgnlevgitlvrdhmneirinigagrlvrpflvvdngelmmdvcpelesrlddmtfsdiqkefphviemvdieqftfsnvcesvqkfrmmskderkqydlcdfpaefrdgyvasslvginhnsgprailgcaqakqaisclssdirnkidngihlmyperpiviskaletskiaancfgqhvtialmsykginqedgiiikkqfiqrggldivtakkhqveiplenfnnkerdrsnaysklesnglvrlnaflesgdamarnissrtleddfardnqisfdvsekytdmyksrvervqveltdkvkvrvltmkerrpilgdkfttrtsqkgtvayvadetelpydengitpdviinstsifsrktismlieviltaaysakpynnkgenrpvcfpssnetsidtymqfakqcyehsnpklsdeelsdkifcekilydpetdkpyaskvffgpiyylrlrhltqdkatvrcrgkktklirqanegrkrgggikfgemerdcliahgaantitevlkdseedyqdvyvcencgdiaaqikgintclrcsklnlsplltkidtthvskvfltqmnargvkvkldferrppsfykpldkvdlkpsf > 8p0k_H interface=19,21,193,196,197,201,211,213,219,221,299,301,326,327, mdnlftflheiedryartIfNfhliscdeigdiyglmkerissedmfdnivynkdihpaikklvycdiqltkhiinqntypvfndssqvkcchyfdinsdnsnissrtveifereksslvsyikttnkkrkvnygeikktvhggtnanyfsgkksdeylsttvrsninqpwiktiskrmrvdiinhsivtrgKssILqtiEiiftnrtcvKiFkdstmHiIlskdkdekgcihmidklfyvyynlfllfediiqneyfkevanvvnhvltataldeklflikkmaehdvygvsnfkigMfNltfiksldhtvfpslldedskikfFKgkklnivalrsledcinyvtksenmiemmkerstilnsidietesvdrlkelllk > 8p0k_I interface=31,76,194, mfepvpdlnleasvelgevnidqttpmikeAhrskdderklalrfflqrlyfldhreihylfrcvdavkdvtitkKnniivapyialltiaskgckltetmieaffpelynehskkfkfnsqvsiiqeklgyqfgnyhvydfepyystvalairdehssgifnirqesylvsslseityrfylinlksdlvqwSastgavinqmvntvlitvyeklqlviendsqftcslavesklpikllkdrnelftkfinelkktssfkiskrdkdtllkyft
interface signature	TS/YRHTQVIS/INKILEKFHIMNFK/AKS

Estimated binding specificities ?

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# IC=13.191 IC/col=0.574 n_of_columns=23

specificity:

A |  96   0   0   0  12  96  96  24  24  24  64  24  24  24  24  24  24  24   0  96  60  56  96
C |   0  96   0   0  16   0   0  24  24  24  12  24  24  24  24  24  24  24   0   0  12  16   0
G |   0   0   0   0  12   0   0  24  24  24  12  24  24  24  24  24  24  24   0   0   8  12   0
T |   0   0  96  96  56   0   0  24  24  24   8  24  24  24  24  24  24  24  96   0  16  12   0

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updated Mon Dec 16 07:49:52 2024