8p0n_ABHI : 3D-footprint complex

structure name	CRYO EM MAP AND MODEL OF THE VACCINIA RNA POLYMERASE INTERMEDIATE PRE- INITIATION OPEN PROMOTER COMPLEX SHALLOW CONFORMATION
experiment	NMR
reference complex	7aoh_S
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8p0n_A interface=213,740,741, aviskvtyslydqkeinatdiiishvkndddigtvkdgrlgamdgalcktcgktelecfghwgkvsiykthivkpefiseiirllnhicihcgllrsrepysddinlkelsghalrrlkdkilskkkscwnsecmqpyqkitfskkkvcfvnklddinvpnsliyqklisihekfwplleihqypanlfytdyfpippliirpaisetneltYllgmivkncnlnadeqviqkavieyddikiisnnttsinlsyitsgknnmirsyivarrkdqtarsvigpstsitvnevgmpayirntltekifvnaftvdkvkqllasnqvkfyfnkrlnqltrirqgkfiknkihllpgdwvevavqeytsiifgrqpslhrynviassirategdtikispgiansqnadfdgdeewmileqnpkavieqsilmypttllkhdihgapvygsiqdeivaayslfriqdlcldevlnilgkygrefdpkgkckfsgkdiytyligekinypgllkdgeiiandvdsnfvvamrhlslagllsdhksnveginfiikssyvfkrylsiygfgvtfkdlrpnstftnkleainvekielikeayakylndvrdgkivplskaleadyvesmlsnltnlnireieehmrqtliddpdnnllkmakagykvnptelmyilgtygqqridgepaetrvlgrvlpyylpdskdpegrgyilnsltkgltgsqyyfsmlvarsqstdivceTSrtgtlarkiikkmedmvvdgygqvvigntlikyaanytkilgsvckpvdliypdesmtwyleisalwnkikqgfvysqkqklakktlapfnflvfvkpttednaikvkdlydmihnviddvrekyfftvsnidfmeyiflthlnpsriritketaitifekfyeklnytlgggtpigiisaqvlsekftqqalssfhtteksgavkqklgfnefnnltnlsknkteiitlvsddisklqsvkinfefvclgelnpnitlrketdkyvvdiivnrlyikraeitelvveymierfisfsvivkewgmetfiedednirftvylnfvepeelnlskfmmvlpgaankgkiskfkipisdytgyddfnqtkklnkmtvelmnlkelgsfdlenvnvypgvwntydifgieaareylceamlntygegfdylyqpcdllasllcasyepesvnkfkfgaastlkratfgdnkallnaalhkksepindnsschffskvpnigtgyykyfidlgllmrmerklsdkissqkikemeetedf > 8p0n_B interface=198,199,200,220,385,443,444,446,447,448, emdqrlgykflvpdpkagvfyrplhfqyvsysnfilhrlheiltvkrpllsfknnterimieisnvkvtppdyspiiasikgksydalatftvnifkevmtkegisitkissyegkdshlikiplligygnknpldtakylvpnviggvfinkqsvekvginlvekittwpkfrvvkpnsftfsfssvsppnvlptrYRHykisldisqlealnisstkTfitvnivllsqylsrvslefirrslsydmppevvylvnaiidsakritesitdfnidtyindlveaehikqksqltinefkyemlhnflphmnytpdqlkgfymisllrkflycifhtsrypdrdsmvchriltygkyfetlahdelenyignirndimnnhknRgtyavnihvlttpglnhafssllsgkfkksdgsyrthphyswmqnisiprsvgfypdQVkISKmfsvrkyhpsqylyfcssdvpergpqvglvsqlsvlssitniltseyldlekkiceyirsyykddisyfetgfpitienalvaslnpnmicdfvtdfrrrkrmgffgnlevgitlvrdhmneirinigagrlvrpflvvdngelmmdvcpelesrlddmtfsdiqkefphviemvdieqftfsnvcesvqkfrmmskderkqydlcdfpaefrdgyvasslvginhnsgprailgcaqakqaisclssdirnkidngihlmyperpiviskaletskiaancfgqhvtialmsykginqedgiiikkqfiqrggldivtakkhqveiplenfnnkerdrsnaysklesnglvrlnaflesgdamarnissrtleddfardnqisfdvsekytdmyksrvervqveltdkvkvrvltmkerrpilgdkfttrtsqkgtvayvadetelpydengitpdviinstsifsrktismlieviltaaysakpynnkgenrpvcfpssnetsidtymqfakqcyehsnpklsdeelsdkifcekilydpetdkpyaskvffgpiyylrlrhltqdkatvrcrgkktklirqanegrkrgggikfgemerdcliahgaantitevlkdseedyqdvyvcencgdiaaqikgintclrcsklnlsplltkidtthvskvfltqmnargvkvkldferrppsfykpldkvdlkpsf > 8p0n_H interface=19,21,23,193,196,197,201,211,213,219,221,299,301,326,327,334, mdnlftflheiedryartIfNfHliscdeigdiyglmkerissedmfdnivynkdihpaikklvycdiqltkhiinqntypvfndssqvkcchyfdinsdnsnissrtveifereksslvsyikttnkkrkvnygeikktvhggtnanyfsgkksdeylsttvrsninqpwiktiskrmrvdiinhsivtrgKssILqtiEiiftnrtcvKiFkdstmHiIlskdkdekgcihmidklfyvyynlfllfediiqneyfkevanvvnhvltataldeklflikkmaehdvygvsnfkigMfNltfiksldhtvfpslldedskikfFKgkklniValrsledcinyvtksenmiemmkerstilnsidietesvdrlkelllk > 8p0n_I interface=31,76,194, mfepvpdlnleasvelgevnidqttpmikeAhrskdderklalrfflqrlyfldhreihylfrcvdavkdvtitkKnniivapyialltiaskgckltetmieaffpelynehskkfkfnsqvsiiqeklgyqfgnyhvydfepyystvalairdehssgifnirqesylvsslseityrfylinlksdlvqwSastgavinqmvntvlitvyeklqlviendsqftcslavesklpikllkdrnelftkfinelkktssfkiskrdkdtllkyft
interface signature	YTS/YRHTRQVISK/INHKILEKFHIMNFKV/AKS

Estimated binding specificities ?

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# IC=16.119 IC/col=0.672 n_of_columns=24

specificity:

A |  96  96   0   0   0   4  96  96  24  24  24  67  24  24  24  24  24  24  69   0  96  81  62  96
C |   0   0  96   0   0   4   0   0  24  24  24   9  24  24  24  24  24  24   9   0   0   4  14   0
G |   0   0   0   0   0   7   0   0  24  24  24   9  24  24  24  24  24  24   9   0   0   4  11   0
T |   0   0   0  96  96  81   0   0  24  24  24  11  24  24  24  24  24  24   9  96   0   7   9   0

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updated Mon Dec 16 07:52:09 2024