8p5q_A : 3D-footprint complex

structure name	STRUCTURE OF AN ALOG DOMAIN FROM ARABIDOPSIS THALIANA IN COMPLEX WITH DNA (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3)
reference	Zubieta et al. 'To ? ? ?
source	Arabidopsis thaliana
experiment	X-ray (resolution=2.14, R-factor=0.216)
sequence family	Protein of unknown function DUF640;
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8p5q_A interface=3,4,7,48,78,80,81,85,128, ssRYenQkrrdwntfgqylrnhrpplslsrcsgahvleflryldqfgKtkvhtnichfyghpnppapcpcplrqawgSlDAligRlraafeenggkpetnpfgaravrlylrevrdmqskargvsyeKk
interface signature	RYQKSDARK

Estimated binding specificities ?

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# IC=7.944 IC/col=0.722 n_of_columns=11

specificity:

A |   0  72  24  24   2   5  69   0   0   0   2
C |   3   2  24  24   5  26   2  96  67   0   5
G |   0  20  24  24  20   2  23   0   0  96   2
T |  93   2  24  24  69  63   2   0  29   0  87

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updated Sun Jan 11 00:58:51 2026