8qqi_ABCD : 3D-footprint complex

structure name	E.COLI DNA GYRASE IN COMPLEX WITH 217 BP SUBSTRATE DNA AND LEI-800
experiment	NMR
structural superfamily	Type II DNA topoisomerase;
reference complex	7z9c_D 8qqi_C
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8qqi_A interface=25,167, itpvnieeelkssyldyamsvivgRalpdvrdglkpvhrrvlyamnvlgndwnkaykksarvvgdvigkyhphgdsavydtivrmaqpfslrymlvdgqgnfgsidgdsaaamryteirlakiahelmadleketvdfvdnydgtekipdvmptkipnllvngssgIavgmatnipphnltevingclayiddedisieglmehipgpdfptaaiingrrgieeayrtgrgkvyiraraevevdaktgretiivheipyqvnkarliekiaelvkekrvegisalrdesdkdgmrivievkrdavgevvlnnlysqtqlqvsfginmvalhhgqpkimnlkdiiaafvrhrrevvtrrtifelrkardrahilealavalanidpiielirhaptpaeaktalvanpwqlgnvaamleragddaarpewlepefgvrdglyylteqqaqaildlrlqkltgleheklldeykelldqiaellrilgsadrlmevireelelvreqfgdkrrteitan > 8qqi_B interface=48, glpgkladcqerdpalselylvegdsaggsakqgrnrknqailplkgKilnvekarfdkmlssqevatlitalgcgigrdeynpdklryhsiiimtdadvdgshirtllltffyrqmpeiverghvyiaqpplykvkkgkqeqyikddeamdqyqisialdgatlhtnasapalagealeklvseynatqkminrmerrypkamlkeliyqptlteadlsdeqtvtrwvnalvselndkeqhgsqwkfdvhtnaeqnlfepivrvrthgvdtdypldhefitggeyrrictlgeklrglleedafiergerrqpvasfeqaldwlvkesrrglsiqrykglgemnpeqlwettmdpesrrmlrvtvkdaiaadqlfttlmgdaveprrafieenalkaa > 8qqi_C interface=167, itpvnieeelkssyldyamsvivgralpdvrdglkpvhrrvlyamnvlgndwnkaykksarvvgdvigkyhphgdsavydtivrmaqpfslrymlvdgqgnfgsidgdsaaamryteirlakiahelmadleketvdfvdnydgtekipdvmptkipnllvngssgIavgmatnipphnltevingclayiddedisieglmehipgpdfptaaiingrrgieeayrtgrgkvyiraraevevdaktgretiivheipyqvnkarliekiaelvkekrvegisalrdesdkdgmrivievkrdavgevvlnnlysqtqlqvsfginmvalhhgqpkimnlkdiiaafvrhrrevvtrrtifelrkardrahilealavalanidpiielirhaptpaeaktalvanpwqlgnvaamleragddaarpewlepefgvrdglyylteqqaqaildlrlqkltgleheklldeykelldqiaellrilgsadrlmevireelelvreqfgdkrrteitan > 8qqi_D interface=48, glpgkladcqerdpalselylvegdsaggsakqgrnrknqailplkgKilnvekarfdkmlssqevatlitalgcgigrdeynpdklryhsiiimtdadvdgshirtllltffyrqmpeiverghvyiaqpplykvkkgkqeqyikddeamdqyqisialdgatlhtnasapalagealeklvseynatqkminrmerrypkamlkeliyqptlteadlsdeqtvtrwvnalvselndkeqhgsqwkfdvhtnaeqnlfepivrvrthgvdtdypldhefitggeyrrictlgeklrglleedafiergerrqpvasfeqaldwlvkesrrglsiqrykglgemnpeqlwettmdpesrrmlrvtvkdaiaadqlfttlmgdaveprrafieenalkaa
interface signature	RI/K/I/K

Estimated binding specificities ?

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# IC=5.766 IC/col=0.444 n_of_columns=13

specificity:

A |   0   0  24  16  24  24  24  24  24  16  24   0   0
C |  96   0  24  13  24  24  24  24  24  13  24   0   0
G |   0  96  24  54  24  24  24  24  24  13  24   0  96
T |   0   0  24  13  24  24  24  24  24  54  24  96   0

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updated Fri Aug 1 16:00:06 2025