8qqs_ABCD : 3D-footprint complex

structure name	E. COLI DNA GYRASE BOUND TO A LINEAR PART OF A DNA MINICIRCLE
experiment	NMR
structural superfamily	Type II DNA topoisomerase;
reference complex	7z9c_C 7z9c_D
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8qqs_A interface=81,118,171, lareitpvnieeelkssyldyamsvivgralpdvrdglkpvhrrvlyamnvlgndwnkaykksarvvgdvigkyhphgdsAvydtivrmaqpfslrymlvdgqgnfgsidgdsaaamRfteirlakiahelmadleketvdfvdnydgtekipdvmptkipnllvngssgIavgmatnipphnltevingclayiddedisieglmehipgpdfptaaiingrrgieeayrtgrgkvyiraraevevdaktgretiivheipyqvnkarliekiaelvkekrvegisalrdesdkdgmrivievkrdavgevvlnnlysqtqlqvsfginmvalhhgqpkimnlkdiiaafvrhrrevvtrrtifelrkardrahilealavalanidpiielirhaptpaeaktalvanpwqlgnvaamleragddaarpewlepefgvrdglyylteqqaqaildlrlqkltgleheklldeykelldqiaellrilgsadrlmevireelelvreqfgdkrrteitan > 8qqs_B interface=386,388,404, sikvlkgldavrkrpgmyigdtddgtglhhmvfevvdnaidealaghckeiivtihadnsvsvqddgrvsvvnalsqklelviqregkihrqiyehgvpqatgtmvrfwpsletftnvtefeyeilakrlrelsflnsgvsirlrdkrdgkedhfhyeggikafveylnknktpihpnifyfstekdgigvevalqwndgfqeniycftnnipqrdggthlagfraamtrtlnaymdkegyskkakvsatgddaregliavvsvkvpdpkfssqtkdklvssevksaveqqmnellaeyllenptdakivvgkiidaarareaarraremtrrkgaldlaglpgkladcqerdpalselylvegdsaggsakqgrnrknqailplKgKilnvekarfdkmlssQevatlitalgcgigrdeynpdklryhsiiimtdadvdgshirtllltffyrqmpeiverghvyiaqpplykvkkgkqeqyikddeamdqyqisialdgatlhtnasapalagealeklvseynatqkminrmerrypkamlkeliyqptlteadlsdeqtvtrwvnalvselndkeqhgsqwkfdvhtnaeqnlfepivrvrthgvdtdypldhefitggeyrrictlgeklrglleedafiergerrqpvasfeqaldwlvkesrrglsiqrykglgemnpeqlwettmdpesrrmlrvtvkdaiaadqlfttlmgdaveprrafieenalkaanidi > 8qqs_C interface=20,117,170, areitpvnieeelkssyldYamsvivgralpdvrdglkpvhrrvlyamnvlgndwnkaykksarvvgdvigkyhphgdsavydtivrmaqpfslrymlvdgqgnfgsidgdsaaamRfteirlakiahelmadleketvdfvdnydgtekipdvmptkipnllvngssgIavgmatnipphnltevingclayiddedisieglmehipgpdfptaaiingrrgieeayrtgrgkvyiraraevevdaktgretiivheipyqvnkarliekiaelvkekrvegisalrdesdkdgmrivievkrdavgevvlnnlysqtqlqvsfginmvalhhgqpkimnlkdiiaafvrhrrevvtrrtifelrkardrahilealavalanidpiielirhaptpaeaktalvanpwqlgnvaamleragddaarpewlepefgvrdglyylteqqaqaildlrlqkltgleheklldeykelldqiaellrilgsadrlmevireelelvreqfgdkrrteitan > 8qqs_D interface=385,387,403, kvlkgldavrkrpgmyigdtddgtglhhmvfevvdnaidealaghckeiivtihadnsvsvqddgrgisvvnalsqklelviqregkihrqiyehgvpqatgtmvrfwpsletftnvtefeyeilakrlrelsflnsgvsirlrdkrdgkedhfhyeggikafveylnknktpihpnifyfstekdgigvevalqwndgfqeniycftnnipqrdggthlagfraamtrtlnaymdkegyskkakvsatgddaregliavvsvkvpdpkfssqtkdklvssevksaveqqmnellaeyllenptdakivvgkiidaarareaarraremtrrkgaldlaglpgkladcqerdpalselylvegdsaggsakqgrnrknqailplKgKilnvekarfdkmlssQevatlitalgcgigrdeynpdklryhsiiimtdadvdgshirtllltffyrqmpeiverghvyiaqpplykvkkgkqeqyikddeamdqyqisialdgatlhtnasapalagealeklvseynatqkminrmerrypkamlkeliyqptlteadlsdeqtvtrwvnalvselndkeqhgsqwkfdvhtnaeqnlfepivrvrthgvdtdypldhefitggeyrrictlgeklrglleedafiergerrqpvasfeqaldwlvkesrrglsiqrykglgemnpeqlwettmdpesrrmlrvtvkdaiaadqlfttlmgdaveprrafieenalkaani
interface signature	ARI/KKQ/YRI/KKQ

Estimated binding specificities ?

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# IC=10.245 IC/col=0.732 n_of_columns=14

specificity:

A |  96  96  24  73  24  73  24  73  96  73  96  24  96  96
C |   0   0  24   7  24   7  24   7   0   7   0  24   0   0
G |   0   0  24   9  24   7  24   9   0   7   0  24   0   0
T |   0   0  24   7  24   9  24   7   0   9   0  24   0   0

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updated Fri Aug 1 16:01:53 2025