8qqu_CD : 3D-footprint complex

structure name	ASYMETRIC SUBUNIT OF E. COLI DNA GYRASE BOUND TO A LINEAR PART OF A DNA MINICIRCLE
experiment	NMR
structural superfamily	Type II DNA topoisomerase;
reference complex	7z9c_C 7z9c_D
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8qqu_C interface=19,116,169, reitpvnieeelkssyldYamsvivgralpdvrdglkpvhrrvlyamnvlgndwnkaykksarvvgdvigkyhphgdsavydtivrmaqpfslrymlvdgqgnfgsidgdsaaamRfteirlakiahelmadleketvdfvdnydgtekipdvmptkipnllvngssgIavgmatnipphnltevingclayiddedisieglmehipgpdfptaaiingrrgieeayrtgrgkvyiraraevevdaktgretiivheipyqvnkarliekiaelvkekrvegisalrdesdkdgmrivievkrdavgevvlnnlysqtqlqvsfginmvalhhgqpkimnlkdiiaafvrhrrevvtrrtifelrkardrahilealavalanidpiielirhaptpaeaktalvanpwqlgnvaamleragddaarpewlepefgvrdglyylteqqaqaildlrlqkltgleheklldeykelldqiaellrilgsadrlmevireelelvreqfgdkrrteitan > 8qqu_D interface=399,401, sikvlkgldavrkrpgmyigdtddgtglhhmvfevvdnaidealaghckeiivtihadnsvsvqddgrgigvsvvnalsqklelviqregkihrqiyehgvpqaplavtgetektgtmvrfwpsletftnvtefeyeilakrlrelsflnsgvsirlrdkrdgkedhfhyeggikafveylnknktpihpnifyfstekdgigvevalqwndgfqeniycftnnipqrdggthlagfraamtrtlnaymdkegyskkakvsatgddaregliavvsvkvpdpkfssqtkdklvssevksaveqqmnellaeyllenptdakivvgkiidaarareaarraremtrrkgaldlaglpgkladcqerdpalselylvegdsaggsakqgrnrknqailplKgKilnvekarfdkmlssqevatlitalgcgigrdeynpdklryhsiiimtdadvdgshirtllltffyrqmpeiverghvyiaqpplykvkkgkqeqyikddeamdqyqisialdgatlhtnasapalagealeklvseynatqkminrmerrypkamlkeliyqptlteadlsdeqtvtrwvnalvselndkeqhgsqwkfdvhtnaeqnlfepivrvrthgvdtdypldhefitggeyrrictlgeklrglleedafiergerrqpvasfeqaldwlvkesrrglsiqrykglgemnpeqlwettmdpesrrmlrvtvkdaiaadqlfttlmgdaveprrafieenalkaani
interface signature	YRI/KK

Estimated binding specificities ?

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# IC=4.087 IC/col=0.681 n_of_columns=6

specificity:

A |  96  96  57  67  24  76
C |   0   0  11   9  24  11
G |   0   0   9  11  24   0
T |   0   0  19   9  24   9

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updated Mon Dec 16 09:10:44 2024