8ree_M : 3D-footprint complex

structure name	CRYO-EM STRUCTURE OF BACTERIAL RNA POLYMERASE-SIGMA54 INITIAL TRANSCRIBING COMPLEX - 9NT COMPLEX
experiment	NMR
sequence family	Sigma54 factor, core binding domain; Sigma54, DNA binding domain;
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8ree_M interface=191,234,236,237,240,311,313,314,317, agtpsgngvgettqslqdylmwqveltpftdtdraiatsivdavddtgyltiqiedivdsigddeigleeveavlkriqrfdpvgvaakdlrdclliqlsqfaketpwleearliisdhldllanhdfrtlmrvtrlkeevlkeavnliqsldprpgqsiqtgepeyvipdvlvrkvndrwvvelnsdslPsandtllrvsrciveqqqaffeqgeeymkpmvladiaqavemHeSTisRvttqkylhsprgifelkyffsshvntegggeasstairalvkkliaaenpakplsdskltsmlseqgimvArRTvaKyreslsippsnq
interface signature	PHSTRARTK

Estimated binding specificities ?

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# IC=5.300 IC/col=0.408 n_of_columns=13

specificity:

A |   0   0  96  24  24  24  24  24  24  24  11   9  11
C |   0  96   0  24  24  24  24  24  24  24   9  11  67
G |  96   0   0  24  24  24  24  24  24  24   9  67   9
T |   0   0   0  24  24  24  24  24  24  24  67   9   9

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updated Sat Jan 10 01:21:07 2026