8rkt_AC : 3D-footprint complex

structure name	CONFORMATIONAL LANDSCAPE OF THE TYPE V-K CRISPR-ASSOCIATED TRANSPOSONINTEGRATION ASSEMBLY CAST V-K CAS12K DOMAIN LOCAL- REFINEMENT MAP
experiment	NMR
structural superfamily	S15/NS1 RNA-binding domain;
reference complex	7n3p_A 8rkt_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8rkt_A interface=3,53,77,78,93,97,99,103,110,147,148,151,174,238,241,258,259,278,323,325,348,373,385,388,389,469,473,480,519,525,526,533,534,537,544,545,548,553,579,582, ssQitiqarlisfesnrqqlwklmadlntplinellcqlgqhpdfekwqqkgKlpstvvsqlcqplktdprfagqpSRlymsaihivdyiykSwlaIqKrlqQqldgktRwlemlnsdaelvelsgdtleairvkaaeilaiamslSKtlFdayqetediksrsaisyllkngCkltdkeedsekfakrrrqveiqiqrlteklisrmpkgrdltnakwletlltatttvaednaqaKrwQdilltrssslpfplvfETnedmvwsknqkgrlcvhfNglsdlifevycgnrqlhwfqrfledqqtkrksknqhssglftlrNgHlvwlegegkgepwnlhhltlycCvdnrlwteegteivrqekadeitkFitnmksdtqqaLiqRKqstltrinnsferpsqplyqgqshilvgvslglekpatvavvdaiankvlayrsikqllgdnyellnrqrrqqqylsheRhkaQknfspnQfgaselgqhidrllakaivalartykagsivlpklgdmRevvqsEIqaiaeqKFpgYiegqqkYAkqYrvnvHrwsygrliqsiqskaaqtgivieegKqpIrgsphdkakelalsaynlrl > 8rkt_C interface=36,46,50,55,57, eapdvkpwlflikpyegeslshflgrfrranhlsaSglgtlagigAivaRwerfHfNprpsqqeleaiasvvevdaqrlaqmlppagvgmqhepirlcgacyaespchriewqyksvwkcdrhqlkilakcpncqapfkmpalwedgcchrcrmpfaemaklqk
interface signature	QKSRSIKQRSKFCKQETNNHCFLRKRQQREIKFYYAYHKI/SARHN

Estimated binding specificities ?

contact

# IC=24.776 IC/col=1.077 n_of_columns=23

specificity:

A |  88   0   0   0   0   0   0  24   0  14   0  96   0   0  96  14   0  96  96  24  73  96   0
C |   0   0   0   0   0  96   0  24   0   7  96   0   0   0   0  14   0   0   0  24   7   0   0
G |   1  96  96   0   0   0   0  24   0  16   0   0  96   0   0  14   0   0   0  24   7   0  96
T |   7   0   0  96  96   0  96  24  96  59   0   0   0  96   0  54  96   0   0  24   9   0   0

scan!

home
updated Mon Dec 16 09:36:37 2024