8squ_AB : 3D-footprint complex

structure name	MONOMERIC MAPSPARTA BOUND WITH GUIDE RNA AND TARGET DNA HYBRID
experiment	NMR
structural superfamily	Toll/Interleukin receptor TIR domain;Ribonuclease H-like;
reference complex	8ffi_E 8ffi_L
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8squ_A interface=215,310, rnkifpddndftrwlalkliglgyevwcdilfldkgdfwsniekviredtckflregvlkelavaakvkkqlkmswarglkdileafekqkvpkevadasksnllyqqiflhdksviekeeiydsnwlsilsfpeelrfheynwmlpkrfdvreltfpavryknylctfawaydftyhlpktetyhksktiripteeilsgsydsnfirnaeckRlivqllnkafelrmkdkevqeyemsnktaywlekgklekdkfektmlvgkqkdknwhfaisgasklypfpvlmisshifftadgkklidsssvqHssrrrqgknwwnntwrtkllafikylsdddtsfylemgseekvfvsnepvkfkgnvsynipe > 8squ_B interface=205,206,209,353,397, mkeliyieepkilfahgqkctdardglalfgplnnlygiksgvigtkqglkifrdyldhiqkpiynsnsitrpmfpgfeavfdckwestgitfkevtnedigkflynssthkrtydlvslfidkiisanknedenvdvwfvivpdeiykycrpnsvlpaetynydaqfhdqfkarllkhtiptqifrestlawrdfknafglpiRDfsKieghlawtistaafykaggkpwklsdvrngvcylglvykkveksknprnaccaaqmfldngdgtvfkgevgpwynpkngqyhlepkeakallsqslqsykeqigeypkevfihaktrfnhqewdaflevtpketnlvgvtiskTkplklyktegdytilrgnayvvnersaflwtvgyvpkiqtalsMevpnplfieinkgeadikqvlkdilsltklnynacifadgepvtlrfadkigeiltastdiktpplafkyyi
interface signature	RH/RDKTM

Estimated binding specificities ?

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# IC=6.782 IC/col=0.484 n_of_columns=14

specificity:

A |  96  21  24  24  24  24  24  24   0   0  24  21   0   0
C |   0  12  24  24  24  24  24  24   0  96  24  21   0  96
G |   0  42  24  24  24  24  24  24  96   0  24  33   0   0
T |   0  21  24  24  24  24  24  24   0   0  24  21  96   0

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updated Thu Jan 8 10:08:31 2026