8squ_AB : 3D-footprint complex

structure name	MONOMERIC MAPSPARTA BOUND WITH GUIDE RNA AND TARGET DNA HYBRID
experiment	NMR
structural superfamily	Toll/Interleukin receptor TIR domain;Ribonuclease H-like;
reference complex	8ffi_E 8ffi_L
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8squ_A interface=215,310, rnkifpddndftrwlalkliglgyevwcdilfldkgdfwsniekviredtckflregvlkelavaakvkkqlkmswarglkdileafekqkvpkevadasksnllyqqiflhdksviekeeiydsnwlsilsfpeelrfheynwmlpkrfdvreltfpavryknylctfawaydftyhlpktetyhksktiripteeilsgsydsnfirnaeckRlivqllnkafelrmkdkevqeyemsnktaywlekgklekdkfektmlvgkqkdknwhfaisgasklypfpvlmisshifftadgkklidsssvqHssrrrqgknwwnntwrtkllafikylsdddtsfylemgseekvfvsnepvkfkgnvsynipe > 8squ_B interface=205,206,209,353,397, mkeliyieepkilfahgqkctdardglalfgplnnlygiksgvigtkqglkifrdyldhiqkpiynsnsitrpmfpgfeavfdckwestgitfkevtnedigkflynssthkrtydlvslfidkiisanknedenvdvwfvivpdeiykycrpnsvlpaetynydaqfhdqfkarllkhtiptqifrestlawrdfknafglpiRDfsKieghlawtistaafykaggkpwklsdvrngvcylglvykkveksknprnaccaaqmfldngdgtvfkgevgpwynpkngqyhlepkeakallsqslqsykeqigeypkevfihaktrfnhqewdaflevtpketnlvgvtiskTkplklyktegdytilrgnayvvnersaflwtvgyvpkiqtalsMevpnplfieinkgeadikqvlkdilsltklnynacifadgepvtlrfadkigeiltastdiktpplafkyyi
interface signature	RH/RDKTM

Estimated binding specificities ?

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# IC=3.029 IC/col=0.216 n_of_columns=14

specificity:

A |  81  21  24  24  21  24  24  24   9  14  24  19  14   0
C |   4  21  24  24  23  24  24  24   9  54  24  19  14  96
G |   4  33  24  24  21  24  24  24  67  14  24  38  16   0
T |   7  21  24  24  31  24  24  24  11  14  24  20  52   0

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updated Thu Sep 12 08:35:24 2024