8squ_AB : 3D-footprint complex

structure name	MONOMERIC MAPSPARTA BOUND WITH GUIDE RNA AND TARGET DNA HYBRID
experiment	NMR
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8squ_A interface=215,310, rnkifpddndftrwlalkliglgyevwcdilfldkgdfwsniekviredtckflregvlkelavaakvkkqlkmswarglkdileafekqkvpkevadasksnllyqqiflhdksviekeeiydsnwlsilsfpeelrfheynwmlpkrfdvreltfpavryknylctfawaydftyhlpktetyhksktiripteeilsgsydsnfirnaeckRlivqllnkafelrmkdkevqeyemsnktaywlekgklekdkfektmlvgkqkdknwhfaisgasklypfpvlmisshifftadgkklidsssvqHssrrrqgknwwnntwrtkllafikylsdddtsfylemgseekvfvsnepvkfkgnvsynipe > 8squ_B interface=205,206,209,353,397, mkeliyieepkilfahgqkctdardglalfgplnnlygiksgvigtkqglkifrdyldhiqkpiynsnsitrpmfpgfeavfdckwestgitfkevtnedigkflynssthkrtydlvslfidkiisanknedenvdvwfvivpdeiykycrpnsvlpaetynydaqfhdqfkarllkhtiptqifrestlawrdfknafglpiRDfsKieghlawtistaafykaggkpwklsdvrngvcylglvykkveksknprnaccaaqmfldngdgtvfkgevgpwynpkngqyhlepkeakallsqslqsykeqigeypkevfihaktrfnhqewdaflevtpketnlvgvtiskTkplklyktegdytilrgnayvvnersaflwtvgyvpkiqtalsMevpnplfieinkgeadikqvlkdilsltklnynacifadgepvtlrfadkigeiltastdiktpplafkyyi
interface signature	RH/RDKTM

Estimated binding specificities ?

contact

# IC=3.029 IC/col=0.151 n_of_columns=20

specificity:

A |  24  24  24  24  24  81  21  24  24  21  24  24  24   9  14  24  19  14   0  24
C |  24  24  24  24  24   4  21  24  24  23  24  24  24   9  54  24  19  14  96  24
G |  24  24  24  24  24   4  33  24  24  21  24  24  24  67  14  24  38  16   0  24
T |  24  24  24  24  24   7  21  24  24  31  24  24  24  11  14  24  20  52   0  24

scan!

home
updated Mon Dec 18 03:02:18 2023