8ssu_A : 3D-footprint complex

structure name	ZNFS 3-11 OF CCCTC-BINDING FACTOR (CTCF) COMPLEXED WITH 19MER DNA
reference	Horton et al. 'Nucleic 51 8447 2023
experiment	X-ray (resolution=2.89, R-factor=0.202)
structural superfamily	beta-beta-alpha zinc fingers;
sequence family	Zinc finger, C2H2 type;
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8ssu_A interface=14,17,20,24,43,45,46,49,71,73,74,77,99,102,129,131,132,135, rphkcpdcdmafvTsgElvRhrrYkhthekpfkcsmcdyasvEvSKlkRhirshtgerpfqcslcsyasrDtYKlkRhmrthsgekpyecyicharftQsgTmkmhilqkhtenvakfhcphcdtviaRkSDlgVhlrkqhsyieqgkkcrycdavfheryaliqhqkshknekrfkcdqcdyacrqerhmimhkrthtgekpyacshcdktfrqkqlldmhfkryhdpnfvp
interface signature	TERYESKRDYKRQTRSDV

Estimated binding specificities ?

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# IC=16.834 IC/col=1.122 n_of_columns=15

specificity:

A |   6   0   0   0   0   0   1   0   0   0   0   6   6   0   6
C |   6   0  96   0  96  96  89  96  96   0   0  75   9   0   9
G |   9  96   0  96   0   0   0   0   0   0  96   9   6  96  75
T |  75   0   0   0   0   0   6   0   0  96   0   6  75   0   6

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updated Sat Sep 14 12:04:04 2024