8ssu_A : 3D-footprint complex

structure name	ZNFS 3-11 OF CCCTC-BINDING FACTOR (CTCF) COMPLEXED WITH 19MER DNA
reference	Horton et al. 'Nucleic 51 8447 2023
experiment	X-ray (resolution=2.89, R-factor=0.202)
structural superfamily	beta-beta-alpha zinc fingers;
sequence family	Zinc finger, C2H2 type;
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8ssu_A interface=17,20,43,46,49,74,77,99,132,135, rphkcpdcdmafvtsgElvRhrrykhthekpfkcsmcdyasvEvsKlkRhirshtgerpfqcslcsyasrdtyKlkRhmrthsgekpyecyicharftQsgtmkmhilqkhtenvakfhcphcdtviarksDlgVhlrkqhsyieqgkkcrycdavfheryaliqhqkshknekrfkcdqcdyacrqerhmimhkrthtgekpyacshcdktfrqkqlldmhfkryhdpnfvp
interface signature	EREKRKRQDV

Estimated binding specificities ?

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# IC=12.437 IC/col=0.655 n_of_columns=19

specificity:

A |  24  24  24  24  13   7  34  10   3  96   3   8   0   0   4   0   0   7  74
C |  24  24  24  24  57  74  20  10  87   0   3  10   0   0   2  96   0  74   7
G |  24  24  24  24  13   8  22  66   3   0  85  70  96  96  88   0  96   7   8
T |  24  24  24  24  13   7  20  10   3   0   5   8   0   0   2   0   0   8   7

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updated Wed Dec 20 04:05:32 2023