8to8_LM : 3D-footprint complex

structure name	ESCHERICHIA COLI RNA POLYMERASE UNWINDING INTERMEDIATE (I1B) AT THE LAMBDA PR PROMOTER
experiment	NMR
structural superfamily	Insert subdomain of RNA polymerase alpha subunit;C-terminal domain of RNA polymerase alpha subunit;RBP11-like subunits of RNA polymerase;
reference complex	3iyd_A 6psq_M 7c97_K 8y6u_I
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8to8_L interface=334,338,356,485,486,489, sqlkllvtrgkeqgyltyaevndhldaddlmlaentadedaaeaaaqrttdpvrmymremgtvelltregeidiakriedginqvqcsvaeypeaitylleqydrveaeearlsdlitgfvlarekfaelraqyvvtrdtikhataqeeilklsevfkqfrlvpkqfdylvnsmrvmmdrvrtqerlimklcveqckmpkknfitlftgnetsdtwfnaaiamnkpwseklhdvseevhralqklqqieeetgltieqvkdinrrmsigeakarrakkemveanlrlvisiakkytnrglqfldliqegniglmkavdkfeyrrgykfstyatWwirQaitrsiadqartiripvHmietinklnrisrqmlqemgreptpeelaermlmpedkirkvlkiakepismetpigddedshlgdfiedttlelpldsatteslraathdvlagltareakvlrmrfgidmntdytleevgkqfdvtREriRqieakalrklrhpsrsevlrsfld > 8to8_M interface= dpillrpvddleltvrsanclkaeaihyigdlvqrtevellktpnlgkkslteikdvlasrglslgmrlenwp
interface signature	WQHRER/

Estimated binding specificities ?

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# IC=0.972 IC/col=0.044 n_of_columns=22

specificity:

A |  78  24  24  24  21  24  24  24  24  24  24  24  24  24  24  24  24  31  19  17  24  38
C |   6  24  24  24  33  24  24  24  24  24  24  24  24  24  24  24  24  23  20  15  24  19
G |   6  24  24  24  21  24  24  24  24  24  24  24  24  24  24  24  24  21  38  15  24  19
T |   6  24  24  24  21  24  24  24  24  24  24  24  24  24  24  24  24  21  19  49  24  20

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updated Fri Aug 1 18:33:04 2025