8to8_LM : 3D-footprint complex

structure name	ESCHERICHIA COLI RNA POLYMERASE UNWINDING INTERMEDIATE (I1B) AT THE LAMBDA PR PROMOTER
experiment	NMR
structural superfamily	Insert subdomain of RNA polymerase alpha subunit;C-terminal domain of RNA polymerase alpha subunit;RBP11-like subunits of RNA polymerase;
reference complex	3iyd_A 7c97_K 8y6u_I
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8to8_L interface=334,338,356,485,486,489, sqlkllvtrgkeqgyltyaevndhldaddlmlaentadedaaeaaaqrttdpvrmymremgtvelltregeidiakriedginqvqcsvaeypeaitylleqydrveaeearlsdlitgfvlarekfaelraqyvvtrdtikhataqeeilklsevfkqfrlvpkqfdylvnsmrvmmdrvrtqerlimklcveqckmpkknfitlftgnetsdtwfnaaiamnkpwseklhdvseevhralqklqqieeetgltieqvkdinrrmsigeakarrakkemveanlrlvisiakkytnrglqfldliqegniglmkavdkfeyrrgykfstyatWwirQaitrsiadqartiripvHmietinklnrisrqmlqemgreptpeelaermlmpedkirkvlkiakepismetpigddedshlgdfiedttlelpldsatteslraathdvlagltareakvlrmrfgidmntdytleevgkqfdvtREriRqieakalrklrhpsrsevlrsfld > 8to8_M interface= dpillrpvddleltvrsanclkaeaihyigdlvqrtevellktpnlgkkslteikdvlasrglslgmrlenwp
interface signature	WQHRER/

Estimated binding specificities ?

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# IC=3.700 IC/col=0.168 n_of_columns=22

specificity:

A |  96  24  24  24  20  24  24  24  24  24  24  24  24  24  24  24  24  24  13   7  24  82
C |   0  24  24  24  41  24  24  24  24  24  24  24  24  24  24  24  24  24  23   0  24   0
G |   0  24  24  24  15  24  24  24  24  24  24  24  24  24  24  24  24  24  54   0  24  14
T |   0  24  24  24  20  24  24  24  24  24  24  24  24  24  24  24  24  24   6  89  24   0

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updated Mon Dec 16 11:36:13 2024