8toe_LM : 3D-footprint complex

structure name	ESCHERICHIA COLI RNA POLYMERASE UNWINDING INTERMEDIATE (I1C) AT THE LAMBDA PR PROMOTER
experiment	NMR
structural superfamily	Insert subdomain of RNA polymerase alpha subunit;C-terminal domain of RNA polymerase alpha subunit;RBP11-like subunits of RNA polymerase;
reference complex	3iyd_A 6psq_M 7c97_K 8y6u_I
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8toe_L interface=303,307,325,454,455, aentadedaaeaaaqttdpvrmymremgtvelltregeidiakriedginqvqcsvaeypeaitylleqydrveaeearlsdlitgfvdelarekfaelraqyvvtrdtikhataqeeilklsevfkqfrlvpkqfdylvnsmrvmmdrvrtqerlimklcveqckmpkknfitlftgnetsdtwfnaaiamnkpwseklhdvseevhralqklqqieeetgltieqvkdinrrmsigeakarrakkemveanlrlvisiakkytnrglqfldliqegniglmkavdkfeyrrgykfstyatWwirQaitrsiadqartiripvHmietinklnrisrqmlqemgreptpeelaermlmpedkirkvlkiakepismetpigddedshlgdfiedttlelpldsatteslraathdvlagltareakvlrmrfgidmntdytleevgkqfdvtRErirqieakalrklrhpsrsevlrsfld > 8toe_M interface= dpillrpvddleltvrsanclkaeaihyigdlvqrtevellktpnlgkkslteikdvlasrglslgmrlenwp
interface signature	WQHRE/

Estimated binding specificities ?

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# IC=4.750 IC/col=0.216 n_of_columns=22

specificity:

A |  96  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  80   5   5  15  80
C |   0  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24   6   5   5  65   5
G |   0  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24   5  81   5  10   5
T |   0  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24   5   5  81   6   6

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updated Fri Aug 1 18:35:06 2025