8toe_LM : 3D-footprint complex

structure name	ESCHERICHIA COLI RNA POLYMERASE UNWINDING INTERMEDIATE (I1C) AT THE LAMBDA PR PROMOTER
experiment	NMR
structural superfamily	Insert subdomain of RNA polymerase alpha subunit;C-terminal domain of RNA polymerase alpha subunit;RBP11-like subunits of RNA polymerase;
reference complex	3iyd_A 7c97_K 8y6u_I
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8toe_L interface=303,307,325,454,455, aentadedaaeaaaqttdpvrmymremgtvelltregeidiakriedginqvqcsvaeypeaitylleqydrveaeearlsdlitgfvdelarekfaelraqyvvtrdtikhataqeeilklsevfkqfrlvpkqfdylvnsmrvmmdrvrtqerlimklcveqckmpkknfitlftgnetsdtwfnaaiamnkpwseklhdvseevhralqklqqieeetgltieqvkdinrrmsigeakarrakkemveanlrlvisiakkytnrglqfldliqegniglmkavdkfeyrrgykfstyatWwirQaitrsiadqartiripvHmietinklnrisrqmlqemgreptpeelaermlmpedkirkvlkiakepismetpigddedshlgdfiedttlelpldsatteslraathdvlagltareakvlrmrfgidmntdytleevgkqfdvtRErirqieakalrklrhpsrsevlrsfld > 8toe_M interface= dpillrpvddleltvrsanclkaeaihyigdlvqrtevellktpnlgkkslteikdvlasrglslgmrlenwp
interface signature	WQHRE/

Estimated binding specificities ?

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# IC=6.059 IC/col=0.275 n_of_columns=22

specificity:

A |   6  18  78   0   6  24  24  24  24  24  24  24  24  24  24  24  24  18  24  24  24   0
C |   0   6   6  96   6  24  24  24  24  24  24  24  24  24  24  24  24  18  24  24  24   0
G |   0  72   6   0   6  24  24  24  24  24  24  24  24  24  24  24  24  54  24  24  24   0
T |  90   0   6   0  78  24  24  24  24  24  24  24  24  24  24  24  24   6  24  24  24  96

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updated Mon Dec 16 11:38:15 2024