8toe_LM : 3D-footprint complex

structure name	ESCHERICHIA COLI RNA POLYMERASE UNWINDING INTERMEDIATE (I1C) AT THE LAMBDA PR PROMOTER
experiment	NMR
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8toe_L interface=303,307,325,454,455, aentadedaaeaaaqttdpvrmymremgtvelltregeidiakriedginqvqcsvaeypeaitylleqydrveaeearlsdlitgfvdelarekfaelraqyvvtrdtikhataqeeilklsevfkqfrlvpkqfdylvnsmrvmmdrvrtqerlimklcveqckmpkknfitlftgnetsdtwfnaaiamnkpwseklhdvseevhralqklqqieeetgltieqvkdinrrmsigeakarrakkemveanlrlvisiakkytnrglqfldliqegniglmkavdkfeyrrgykfstyatWwirQaitrsiadqartiripvHmietinklnrisrqmlqemgreptpeelaermlmpedkirkvlkiakepismetpigddedshlgdfiedttlelpldsatteslraathdvlagltareakvlrmrfgidmntdytleevgkqfdvtRErirqieakalrklrhpsrsevlrsfld > 8toe_M interface= dpillrpvddleltvrsanclkaeaihyigdlvqrtevellktpnlgkkslteikdvlasrglslgmrlenwp
interface signature	WQHRE/

Estimated binding specificities ?

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# IC=6.114 IC/col=0.278 n_of_columns=22

specificity:

A |   5  20  96   0   5  24  24  24  24  24  24  24  24  24  24  24  24  21  24  24  24   0
C |   6   5   0  96   5  24  24  24  24  24  24  24  24  24  24  24  24  15  24  24  24   0
G |   5  65   0   0   6  24  24  24  24  24  24  24  24  24  24  24  24  50  24  24  24   0
T |  80   6   0   0  80  24  24  24  24  24  24  24  24  24  24  24  24  10  24  24  24  96

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updated Thu Sep 12 09:12:58 2024