interface graph thumbnail
legend  pdf

structure nameESCHERICHIA COLI RNA POLYMERASE CLOSED COMPLEX INTERMEDIATE AT THE LAMBDA PR PROMOTER
experimentNMR
structural superfamilyInsert subdomain of RNA polymerase alpha subunit;C-terminal domain of RNA polymerase alpha subunit;RBP11-like subunits of RNA polymerase;
reference complex3iyd_A 6psq_M 7c97_K 8y6u_I
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureTRERQ/

Estimated binding specificities ?

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# IC=5.239 IC/col=0.873 n_of_columns=6 specificity:   
A |   0   0   6  54  96   6
C |   0   0  75  20   0  75
G |  96   6   6   9   0   9
T |   0  90   9  13   0   6
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updated Thu Jan 8 10:56:50 2026