8u3b_ACDFGH : 3D-footprint complex

Interface of input file ?

structure name	CRYO-EM STRUCTURE OF E. COLI NARL-TRANSCRIPTION ACTIVATION COMPLEX AT 3.2A
experiment	NMR
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8u3b_A interface=280, teflkprlvdieqvssthakvtleplergfghtlgnalrrillssmpgcavteveidgvlheystkegvqedileillnlkglavrvqgkdeviltlnksgigpvtaadithdgdveivkpqhvichltdenasismrikvqrgrgyvpastrihseederpigrllvdacyspveriaynveaarveqrtdldklviemetngtidpeeairraatilaeqleafvdlrfdpillrpvddleltvrsanclkaeaihyigdlvqrtevellktpnlgkKslteikdvlasrglslgmrlenwpp > 8u3b_C interface=142,150,174,182,198,370,373,393,493,495,513,537,541, vysytekkrirkdfgkrpqvldvpyllsiqldsfqkfieqdpegqygleaafrsvfpiqsysgnselqyvsyrlgepvfdvqecqirgvtysaplrvklrlviyereapegtvkdikeqevymgeiplmtdngtfvingteRvivsqlhRspgvffdsdkgkthssgkvlynaRiipyrgsWldfefdpkdnlfvriDrrrklpatiilralnytteqildlffekvifeirdnklqmelvperlrgetasfdieangkvyvekgrritarhirqlekddvklievpveyiagkvvakdyidestgelicaanmelsldllaklsqsghkrietlftndldhgpyisetlrvdptndrlsalveiyrmmRpgEpptreaaeslfenlffsedRydlsavgrmkfnrsllreeiegsgilskddiidvmkklidirngkgevddidhlgnrrirsvgemaenqfrvglvrveravkerlslgdldtlmpqdmiNaKpisaavkeffgssqlsqFmdqnnplseithkrrisalgpggLtreRagfevrdvhpthygrvcpietpegpniglinslsvyaqtneygfletpyrkvtdgvvtdeihylsaieegnyviaqansnldeeghfvedlvtcrskgesslfsrdqvdymdvstqqvvsvgaslipflehddanralmganmqrqavptlradkplvgtgmeravavdsgvtavakrggvvqyvdasrivikvnedemypgeagidiynltkytrsnqntcinqmpcvslgepvergdvladgpstdlgelalgqnmrvafmpwngynfedsilvservvqedrfttihiqelacvsrdtklgpeeitadipnvgeaalskldesgivyigaevtggdilvgkvtpkgetqltpeekllraifgekasdvkdsslrvpngvsgtvidvqvftrdgvekdkraleieemqlkqakkdlseelqileaglfsriravlvaggveaekldklprdrwlelgltdeekqnqleqlaeqydelkhefekkleakrrkitqgddlapgvlkivkvylavkrriqpgdkmagrhgnkgviskinpiedmpydengtpvdivlnplgvpsrmnigqilethlgmaakgigdkinamlkqqqevaklrefiqraydlgadvrqkvdlstfsdeevmrlaenlrkgmpiatpvfdgakeaeikellklgdlptsgqirlydgrtgeqferpvtvgymymlklnhlvddkmharstgsyslvtqqplggkaqfggqrfgemevwaleaygaaytlqemltvksddvngrtkmyknivdgnhqmepgmpesfnvllkeirslginielede > 8u3b_D interface=196,241,245,338,776,777, eefdaikialaspdmirswsfgevkkpetinyrtfkperdglfcarifgpvkdyeclcgkykrlkhrgvicekcgvevtqtkvrrermghielasptahiwflkslpsrigllldmplrdiervlyfesyvvieggmtnlerqqilteeqyldaleefgdefdakmgaeaiqallksmdleqeceqlreelnetnSetkrkkltkriklleafvqsgnkpewmiltvlpvlppdlrplvpLdggRfatsdlndlyrrvinrnnrlkrlldlaapdiivrnekrmlqeavdalldngrrgraitgsnkrplksladmikgkqgrfrqnllgkrvdysgRsvitvgpylrlhqcglpkkmalelfkpfiygklelrglattikaakkmvereeavvwdildevirehpvllnraptlhrlgiqafepvliegkaiqlhplvcaaynadfdgdqmavhvpltleaqlearalmmstnnilspangepiivpsqdvvlglyymtrdcvnakgegmvltgpkeaerlyrsglaslharvkvriteyekdangelvaktslkdttvgrailwmivpkglpysivnqalgkkaiskmlntcyrilglkptvifadqimytgfayaarsgasvgiddmvipekkheiiseaeaevaeiqeqfqsglvtagerynkvidiwaaandrvskammdnlqtetvinrdgqeekqvsfnsiymmadsgargsaaqirqlagmrglmakpdgsiietpitanfreglnvlqyfisthgarkgladtalkTAnsgyltrrlvdvaqdlvvteddcgthegimmtpvieggdvkeplrdrvlgrvtaedvlkpgtadilvprntllheqwcdlleensvdavkvrsvvscdtdfgvcahcygrdlarghiinkgeaigviaaqsigepgtqltmaaessiqvknkgsiklsnvksvvnssgklvitsrntelklidefgrtkesykvpygavlakgdgeqvaggetvanwdphtmpvitevsgfvrftdmidgqtitrqtdeltglsslvvldsaertaggkdlrpalkivdaqgndvlipgtdmpaqyflpgkaivqledgvqissgdtlaripqeitgglprvadlfearrpkepailaeisgivsfgketkgkrrlvitpvdgsdpyeemipkwrqlnvfegervergdvisdgpeaphdilrlrgvhavtryivnevqdvyrlqgvkindkhievivrqmlrkativnagssdflegeqveysrvkianreleangkvgatysrdllgitkaslatesfisaasfqettrvlteaavagkrdelrglkenvivgrlipagtgyayhqdrmrrraag > 8u3b_F interface=9,10,13,21,23,201,203,204,212,215,219,237,241,243,246,247,248,250,251,252,255,261,273,279,286,323,329,331,332,340,401,402,403,404,406,411, eigrttdpVRmyMremgtveLlTregeidiakriedginqvqcsvaeypeaitylleqydrvefvdpnaeelarekfaelraqyvvtrdtikakgrshataqeeilklsevfkqfrlvpkqfdylvnsmrvmmdrvrtqerlimklcveqckmevhralqklqqieeetgltieqvkdinrrmsigeakarrakkemveaNlRLvisiakkYtnRglqFldliqegniglmkavdkFeyrRgYkfSTYaTWWirQaitrsIadqartiripvHmietiNklnrisRqmlqemgreptpeelaermlmpedkirkvlkiakepIsmetpIgDDedshlgdFiedttlelpldsatteslraathdvlagltareakvlrmrfgidmntdytleevgkqfdvTRERiRqieaKalrklrhpsrsevlrsfldd > 8u3b_G interface=23,34,35,38,39,41,42, rdvnqltprerdilkliaqglpNkmiarrlditEStvKVhVKhmlkkmklksrveaavwvhqerif > 8u3b_H interface=35,36,38,39,40,42,43, rdvnqltprerdilkliaqglpnkmiarrlditeSTvKVHvKHmlkkmklksrveaavwvhqerif
interface signature	K/RRRWDRERNKFLR/SLRRTA/VRMLTNRLYRFFRYSTYTWWQIHNRIIDDFTRERRK/NESKVVK/STKVHKH

Estimated binding specificities ?

contact

# IC=38.415 IC/col=0.591 n_of_columns=65

specificity:

A |   6  24  24  24  24  24  24  24  24  24  24  96   4  24   0  24   0   0   0   0   0  96   0   0   0   0  96  24  24   9   1  24  24  24  24  24  24  24  24  24  24  24  24  24  24   0   0  24  96  24   0  87   0   0  96   6   6  24  24   3   0  24   0   0   0
C |  78  24  24  24  24  24  24  24  24  24  24   0   3  24  96  24   0   0   0   0  96   0   0   0   0   0   0  24  24  66  92  24  24  24  24  24  24  24  24  24  24  24  24  24  24   0   0  24   0  24   0   3  96  96   0   6   6  24  24   3   0  24   0   0   0
G |   6  24  24  24  24  24  24  24  24  24  24   0   3  24   0  24  96   0   0   0   0   0  96  96  96   0   0  24  24   9   3  24  24  24  24  24  24  24  24  24  24  24  24  24  24   0   0  24   0  24   0   3   0   0   0   6   6  24  24   3   0  24  96   0   0
T |   6  24  24  24  24  24  24  24  24  24  24   0  86  24   0  24   0  96  96  96   0   0   0   0   0  96   0  24  24  12   0  24  24  24  24  24  24  24  24  24  24  24  24  24  24  96  96  24   0  24  96   3   0   0   0  78  78  24  24  87  96  24   0  96  96

scan!

home
updated Thu Sep 12 09:43:06 2024