8u8l_AB : 3D-footprint complex

structure name	X-RAY CRYSTAL STRUCTURE OF TEBP-2 MCD3 WITH DS DNA
reference	Nandakumar et al. Proc.Natl.Acad.Sci.USA 121 e2316651121 2024
source	Caenorhabditis elegans
experiment	X-ray (resolution=2.20, R-factor=?)
reference complex	8u8l_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8u8l_A interface=4,38,55,56,58,59,62,63, iekRtkftvddhvvawkfiyeklveadkegvqlmpkgIafwndfvrvtrssksaTNwSShfRKimcpglhemplhkktilyllknigieidketeqiierkfnvkllvgidrnlisyklld > 8u8l_B interface=6,40,57,58,60,61,64,65, kriekRtkftvddhvvawkfiyeklveadkegvqlmpkgIafwndfvrvtrssksaTNwSShfRKimcpglhemplhkktilyllknigieidketeqiierkfnvkllvgidrnlisyklld
interface signature	RITNSSRK/RITNSSRK

Estimated binding specificities ?

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# IC=13.928 IC/col=1.071 n_of_columns=13

specificity:

A |  12  96  96  14   0   0   0  96  83   6   0   0   0
C |  12   0   0   6  96  96   0   0   7  14  96  96   6
G |   6   0   0  64   0   0   0   0   6  70   0   0   1
T |  66   0   0  12   0   0  96   0   0   6   0   0  89

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updated Sat Jun 27 21:19:52 2026