8urq_ABF : 3D-footprint complex

structure name	SPO11 CORE COMPLEX WITH GAPPED DNA
experiment	NMR
structural superfamily	DNA topoisomerase IV, alpha subunit;
reference complex	8urq_A 8urq_B 8urq_F
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8urq_A interface=125,155,224,304, aleglrkkyktrqelvkaltpkrrsihlnscsnadvlahikhflslaansleqhqqpisivfqnkkkhttldfplngphlsthqfklkrcaillnllkvvmeklplgknttvrdifysnvelfqRqanvvqwldvirfnfklsprkslniipaqKglvyspfpidiydniqkqtifsgkpclipffqddaviklgnivivekeavftklvnnyhntmlitgkgFpdfltrlflkkleqycsnlisdcsiftdadpygisialnythsnernayictmanykgiritqvlaqnnesiqllslnqRdyslaknliasltanswdiatsplknvviecqreiffqkkaemneidagifkyk > 8urq_B interface=212,214, arditfltvflsawtstvriegpenslyiplllkiklnfkmnqelftklreivgssirfweeqlfyqvqdvstienhvilslkctiltdaqistfiskprelhthakgypeiyylselsttvnffskegnyveisqviphfneyfsslivsqlefeypmvfsmisrlrlkwqqsslapisyaltsnsvllpimlnmiaqdkssttayqilcRrRgppiqnfqifslp > 8urq_F interface= nkitctqdflhqyfvtervsiqfglnnktvkrinkdefdkavncimswtn
interface signature	RKFR/RR/

Estimated binding specificities ?

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# IC=5.002 IC/col=0.455 n_of_columns=11

specificity:

A |   0   6  90  42  18  24  24  24  24  24   0
C |   0  78   0  18   6  24  24  24  24  24  90
G |  96   6   6  12   0  24  24  24  24  24   0
T |   0   6   0  24  72  24  24  24  24  24   6

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updated Mon Dec 16 13:08:17 2024