8v6i_ACD : 3D-footprint complex

structure name	DNA ELONGATION COMPLEX (CONFIGURATION 1) OF XENOPUS LAEVIS DNA POLYMERASE ALPHA-PRIMASE
experiment	NMR
structural superfamily	DNA/RNA polymerases;Ribonuclease H-like;Prim-pol domain;
reference complex	8g9l_A 8g9l_B 8v6i_D
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8v6i_A interface=338,339,446,573,577,584,586,675,703, qvfrfywldayedqysqpgvvylfgkvwiesadayvsccvsvkniertvyllprenrvqlstgkdtgapvsmmhvyqefneavaekykimkfkskkvdkdyafeipdvpasseylevrysadspqlpqdlkgetfshvfgtntsslelfllsrkikgpswleikspqlssqpmswckveavvtrpdqvsvvkdlapppvvvlslsmktvqnakthqneivaiaalvhhtfpldkappqppfqthfcvlsklndcifpydyneavkqknanieialtertllgfflakihkidpdvivghdiygfdlevllqrinsckvpfwskigrlrrsvmpklggRSgfaernaacgriicdieisakelircksyhlselvhqilkaervvippenirnayndsvhllymlentwidakfilqimcelnvlplalqitniagnvmsrtlmggRserneylllhaftennfivpdkpvaayagglvlepkvgfydkfillldfnslypsiiqeynicfttvhreadeipelphsdlemgilpreirklverrrhvkqlmkqpdlnpdlylqydirqkalkLtanSmygclgFsYsrfyakplaalvthqgreillhtkemvqkmnleviygdtdsimintncnnleevfklgnrvkseinksyklleididgifksllllkkKkyaaltveptgdgkyvtkqelkgldivRrdwcelakqagnyvisqilsdqprdsiveniqkklteigenvtngtvpitqyeinkaltkdpqdypdkkslphvhvalwinsqggrkvkagdtisyvicqdgsnlsasqrayaqeqlqkqenlsidtqyylsqqvhpvvaricepidgidsaliamwlgldpsqfrdcerfkffcpkcgteniydnvfdgsglqiepglkrcskpecdaspldyviqvhnkllldirryikkyysgwlvceektcqnrtrrlplsfsrngpicqacskatlrseypekalytqlcfyrfifdwdyalekvvseqerghlkkklfqesenqykklkstvdqvlsrsgysevnlsklfq > 8v6i_C interface=184,187,188,190,286,326,330,331,339,341,342, tgdrkgdlypsslqfyqhpptenisliefetfaierlkllkavenlgvsyvknseeyskklelelrklkfpyrplheeisddvydlrrkdhishfilrlaycqsedlrrwfiqqemdlfkfrfglltkesvqeflklndlqyvaisedeknmhkedlmnssfglsltkmedtefykvpfqaalDlvRPrKvflwrgfafiphkdivsivlndfraklskalalsarslpvvqsderlqpllnhlshsyiisleqidgfaaksfplcmrqlhkslrenhhlrhggrMqyglflkgigltleqalqfwrleftkgkvdsekfdkvyaYsirHNygkegkrTdYTpyscmkvilsnppsqgdyhgcpfrhsdpellkqklqsfkvpssginqilelvkgmhyqlacqkyfelthsvddcgfslnhpnqyfaesqkllt > 8v6i_D interface= ydpaslpdvlplyyrrlfpfyqyfrwlnyggvvknyfqhrefsftlkddvyvryqsfnnqselekemqkmcpykidigavyshrpslhntvksgtfqaqekelvfdidmtdyddvrrccssadicpkcwtlmtiavrildralaedfgfkhrlwvysgrrgvhcwvcddsarklsqaersavaEylSVvKggeetikkvqlpetihpfigkslkmveryfekyalvdqdilenkqcwdkvialvpevaresllrefskarssverwdklsscleatrrysnipkeImlqfcyprldvnvskglnhllkspfsvhpktgrisvpidCkklDQfdpfsvpTiSLicseldnvrtrdykrtslapyikvfeqfldkldqsrkge
interface signature	RSRLSFYKR/DRPKMYHNTYT/ESVKICDQTSL

Estimated binding specificities ?

contact

# IC=11.290 IC/col=0.418 n_of_columns=27

specificity:

A |   6   0   0   0  24  24   6  24  66  24  24  24  24  24  24  24  24  24  24  24  24  24   0  12   0   0   0
C |  12   0   0  96  24  24   6  24  12  24  24  24  24  24  24  24  24  24  24  24  24  24  96  66   0   0   0
G |  12  96   0   0  24  24   6  24  12  24  24  24  24  24  24  24  24  24  24  24  24  24   0   6   0  96   0
T |  66   0  96   0  24  24  78  24   6  24  24  24  24  24  24  24  24  24  24  24  24  24   0  12  96   0  96

scan!

home
updated Mon Dec 16 13:20:46 2024