8vat_ABCDE : 3D-footprint complex

structure name	STRUCTURE OF THE E. COLI CLAMP LOADER BOUND TO THE BETA CLAMP IN A OPEN-RNAP/T CONFORMATION
experiment	NMR
structural superfamily	P-loop containing nucleoside triphosphate hydrolases;post-AAA+ oligomerization domain-like;
reference complex	8gj0_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8vat_A interface=214,215,242,244,245,279,281,282,312,313,316, mirlypeqlraqlneglraaylllgndplllqesqdavrqvaaaqgfeehhtfsidpntdwnaifslcqamslfasrqtlllllpengpnaaineqlltltgllhddlllivrgnklskaqenaawftalanrsvqvtcqtpeqaqlprwvaarakqlnlelddaanqvlcycyegnllalaqalerlsllwpdgkltlprveqavndaahftPFhwvdallmgkskralhilqqlrlegsEpVIllrtlqrellllvnlkrqsahtplralfdkhrvWqNRrgmmgealnrlsqtqlrqavqlltrteltLKqdYgqsvwaeleglslllchkpladvfidg > 8vat_B interface=103,136, gphmsyqvlarkwrpqtfadvvgqehvltalanglslgrihhaylfsgtrgvgktsiarllakglncetgitatpcgvcdncreieqgrfvdlieidaasrtKvedtrdlldnvqyapargrfkvylidevhmlsRhsfnallktleeppehvkfllattdpqklpvtilsrclqfhlkaldveqirhqlehilneehiahepralqllaraaegslrdalsltdqaiasgdgqvstqavsamlgtldddqalslveamveangervmalineaaargieweallvemlgllhriamvqlspaalgndmaaielrmrelartipptdiqlyyqtlligrkelpyapdrrmgvemtllralafhp > 8vat_C interface= gphmsyqvlarkwrpqtfadvvgqehvltalanglslgrihhaylfsgtrgvgktsiarllakglncetgitatpcgvcdncreieqgrfvdlieidaasrtKvedtrdlldnvqyapargrfkvylidevhmlsRhsfnallktleeppehvkfllattdpqklpvtilsrclqfhlkaldveqirhqlehilneehiahepralqllaraaegslrdalsltdqaiasgdgqvstqavsamlgtldddqalslveamveangervmalineaaargieweallvemlgllhriamvqlspaalgndmaaielrmrelartipptdiqlyyqtlligrkelpyapdrrmgvemtllralafhprmplpe > 8vat_D interface= gphmsyqvlarkwrpqtfadvvgqehvltalanglslgrihhaylfsgtrgvgktsiarllakglncetgitatpcgvcdncreieqgrfvdlieidaasrtKvedtrdlldnvqyapargrfkvylidevhmlsRhsfnallktleeppehvkfllattdpqklpvtilsrclqfhlkaldveqirhqlehilneehiahepralqllaraaegslrdalsltdqaiasgdgqvstqavsamlgtldddqalslveamveangervmalineaaargieweallvemlgllhriamvqlspaalgndmaaielrmrelartipptdiqlyyqtlligrkelpyapdrrmgvemtllralafhp > 8vat_E interface= mrwypwlrpdfeklvasyqagrghhalliqalpgmgddaliyalsryllcqqpqghkscghcrgcqlmqagthpdyytlapekgkntlgvdavrevteklneHarlggakvvwvtdaalltdaaanallktleepPaetwfflatreperllatlrsrcrlhylapppeqyavtwlsrevtmsqdallaalrlsagspgaalalfqgdnwqaretlcqalaysvpsgdwysllaalnheqaparlhwlatllmdalkrhhgaaqvtnvdvpglvaelanhlspsrlqailgdvchireqlmsvtginrellitdlllriehylqpgvvlpvphl
interface signature	PFEVIWNRLKY/KR/KR/KR/HP

Estimated binding specificities ?

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# IC=9.805 IC/col=0.700 n_of_columns=14

specificity:

A |   0  13   0   0   0   0   0   0  24  24  24  24  24  13
C |   0  16   0   0   0   0   0  96  24  24  24  24  24  57
G |   0  13   0   0   0   0   0   0  24  24  24  24  24  13
T |  96  54  96  96  96  96  96   0  24  24  24  24  24  13

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updated Thu Jan 8 12:55:51 2026