8vcj_BCEFGX : 3D-footprint complex

structure name	CRYOEM STRUCTURE OF THE TNSC(1-503)-TNSD(1-318)-DNA COMPLEX IN A 7:2:1 STOICHIOMETRY FROM E. COLI TN7 BOUND TO ATPGS AND ADP
experiment	NMR
structural superfamily	P-loop containing nucleoside triphosphate hydrolases;
reference complex	7mcs_F
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8vcj_B interface=205,239, atriqavyrdtgveayrdnpfiealpplqesvnsaaslksslqltssdlqksrvirahticripddyfqplgthlllserisvmirggyvgrnpktgdlqkhlqngyervqtgeletfrfeearstaqsllligcsgsgkttslhrilatypqviyhrelnveqvvylkidcshngslkeiclnffraldralgsnyerryglkRhgietmlalmsqianahalgllvideiqhlsrsRsggsqemlnffvtmvniigvpvmligtpkareifeadlrsarrgagfgaifwdpiqqtqrgkpnqewiaftdnlwqlqllqrkdallsdevrdvwyelsqgvmdivvklfvlaqlralalgneritagllrqvyqdelkpvhpmlealrsgiperiarysdlvvpeidkrliqlqldiaaiqeqtpeekalqeldtedqrhlylmlkedydsslliptikkafsqnptmtrqkllplvlqwlme > 8vcj_C interface=205, atriqavyrdtgveayrdnpfiealpplqesvnsaaslksslqltssdlqksrvirahticripddyfqplgthlllserisvmirggyvgrnpktgdlqkhlqngyervqtgeletfrfeearstaqsllligcsgsgkttslhrilatypqviyhrelnveqvvylkidcshngslkeiclnffraldralgsnyerryglkRhgietmlalmsqianahalgllvideiqhlsrsrsggsqemlnffvtmvniigvpvmligtpkareifeadfgaifwdpiqqtqrgkpnqewiaftdnlwqlqllqrkdallsdevrdvwyelsqgvmdivvklfvlaqlralalgneritagllrqvyqdelkpvhpmlealrsgiperiarysdlvv > 8vcj_E interface= triqavyrdtgveayrdnpfiealpplqesvnsaaslksslqltssdlqksrvirahticripddyfqplgthlllserisvmirggyvgrnpktgdlqkhlqngyervqtgeletfrfeearstaqsllligcsgsgkttslhrilatypqviyhrelnveqvvylkidcshngslkeiclnffraldralgsnyerryglkrHgietmlalmsqianahalgllvideiqhlsrsrsggsqemlnffvtmvniigvpvmligtpkareifeadlrsarrgagfgaifwdpiqqtqrgkpnqewiaftdnlwqlqllqrkdallsdevrdvwyelsqgvmdivvklfvlaqlralalgneritagllrqvyqdelkpvhpmlealrsgiperiarysdlvvpeidkrliqlqldiaaiqeqtpeekalqeldtedqrhlylmlkedydsslliptikkafsqnptmtrqkllplvlqwlme > 8vcj_F interface=239, atriqavyrdtgveayrdnpfiealpplqesvnsaaslksslqltssdlqksrvirahticripddyfqplgthlllserisvmirggyvgrnpktgdlqkhlqngyervqtgeletfrfeearstaqsllligcsgsgkttslhrilatypqviyhrelnveqvvylkidcshngslkeiclnffraldralgsnyerryglkrhgietmlalmsqianahalgllvideiqhlsrsRsggsqemlnffvtmvniigvpvmligtpkareifeadlrsarrgagfgaifwdpiqqtqrgkpnqewiaftdnlwqlqllqrkdallsdevrdvwyelsqgvmdivvklfvlaqlralalgneritagllrqvyqdelkpvhpmlealrsgiperiarysdlvv > 8vcj_G interface=206, gatriqavyrdtgveayrdnpfiealpplqesvnsaaslksslqltssdlqksrvirahticripddyfqplgthlllserisvmirggyvgrnpktgdlqkhlqngyervqtgeletfrfeearstaqsllligcsgsgkttslhrilatypqviyhrelnveqvvylkidcshngslkeiclnffraldralgsnyerryglkRhgietmlalmsqianahalgllvideiqhlsrsrsggsqemlnffvtmvniigvpvmligtpkareifeadfgaifwdpiqqtqrgkpnqewiaftdnlwqlqllqrkdallsdevrdvwyelsqgvmdivvklfvlaqlralalgneritagllrqvyqdelkpvhpmlealrsgiperiarysdlvv > 8vcj_X interface=279, mrnfpvpysneliystiaragvyqgivspkqlldevygnrkvvatlglpshlgviarhlhqtgryavqqliyehtlfplyapfvgkerrdeairlmeyqaqgavhlmlgvaasrvksdnrfrycpdcvalqlnrygeafwqrdwylpalpycpkhgalvffdravddhrhqfwalghtellsdypkdslsqltalaayiaplldapraqelspsleqwtlfyqrlaqdlgltkskhirhdlvaervrqtfsdealekldlklaenkdtcwlksifrkhRkafsylqhsivwqallpkltviealqqasal
interface signature	RR/R/H/R/R/R

Estimated binding specificities ?

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# IC=7.625 IC/col=0.254 n_of_columns=30

specificity:

A |  96   0  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24   7   0   7  73  24  24  24  24  24  24  24   0  73
C |   0  96  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24   7   0  73   7  24  24  24  24  24  24  24   0   7
G |   0   0  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24   7  96   7   7  24  24  24  24  24  24  24   0   7
T |   0   0  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  75   0   9   9  24  24  24  24  24  24  24  96   9

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updated Mon Dec 16 13:29:20 2024