8vmo_AB : 3D-footprint complex

structure name	HOMING ENDONUCLEASE I-PPOI-DNA COMPLEX:GROUND STATE AT PH7.0 (K+ MES) WITH NA+
reference	Chang et al. 'To ? ? ?
source	Physarum polycephalum
experiment	X-ray (resolution=1.68, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8vmo_A interface=54,56,60,62,64,66,71,73,115,119, altnaqilavidsweetvgqfpvithhvplggglqgtlhcyeiplaapygvgfAkNgptRwQyKrTinqvVhRwgshtvpfllepdningktctashlchntrchnplhlcwesLddnKgrnwcpgpnggcvhavvclrqgplygpgatvagpqqrgshfvv > 8vmo_B interface=54,56,60,62,64,66,71,73,115,119, altnaqilavidsweetvgqfpvithhvplggglqgtlhcyeiplaapygvgfAkNgptRwQyKrTinqvVhRwgshtvpfllepdningktctashlchntrchnplhlcwesLddnKgrnwcpgpnggcvhavvclrqgplygpgatvagpqqrgshfvv
interface signature	ANRQKTVRLK/ANRQKTVRLK

Estimated binding specificities ?

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# IC=21.244 IC/col=1.062 n_of_columns=20

specificity:

A |   0   0  13   0   0   0   0   7  11   0  96  69   0  75   0  96   0   6   0  80
C |   0   0   1  96   0  96  67  86   7   0   0  13   3   0   0   0   0  49  96   7
G |   0  96  79   0   0   0   1   3   3   0   0   7  92  21  96   0  96   7   0   6
T |  96   0   3   0  96   0  28   0  75  96   0   7   1   0   0   0   0  34   0   3

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updated Thu Sep 12 10:59:39 2024