8vmo_AB : 3D-footprint complex

structure name	HOMING ENDONUCLEASE I-PPOI-DNA COMPLEX:GROUND STATE AT PH7.0 (K+ MES) WITH NA+
reference	Chang et al. 'To ? ? ?
source	Physarum polycephalum
experiment	X-ray (resolution=1.68, R-factor=?)
structural superfamily	His-Me finger endonucleases;
reference complex	8vms_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8vmo_A interface=54,56,60,62,64,66,71,73,115,119, altnaqilavidsweetvgqfpvithhvplggglqgtlhcyeiplaapygvgfAkNgptRwQyKrTinqvVhRwgshtvpfllepdningktctashlchntrchnplhlcwesLddnKgrnwcpgpnggcvhavvclrqgplygpgatvagpqqrgshfvv > 8vmo_B interface=54,56,60,62,64,66,71,73,115,119, altnaqilavidsweetvgqfpvithhvplggglqgtlhcyeiplaapygvgfAkNgptRwQyKrTinqvVhRwgshtvpfllepdningktctashlchntrchnplhlcwesLddnKgrnwcpgpnggcvhavvclrqgplygpgatvagpqqrgshfvv
interface signature	ANRQKTVRLK/ANRQKTVRLK

Estimated binding specificities ?

readout + contact

# IC=21.238 IC/col=1.062 n_of_columns=20

specificity:

A |   0   0  19   0   0   0   0   5   7   0  96  71   0  62   0  96   0   3   0  74
C |   0   0   3  96   0  96  68  84   7   0   0   7   2   0   0   0   0  17  96   7
G |   0  96  69   0   0   0   0   7   4   0   0   9  94  34  96   0  96   3   0   5
T |  96   0   5   0  96   0  28   0  78  96   0   9   0   0   0   0   0  73   0  10

scan!

home
updated Thu Jan 8 13:10:13 2026