8vmo_AB : 3D-footprint complex

structure name	HOMING ENDONUCLEASE I-PPOI-DNA COMPLEX:GROUND STATE AT PH7.0 (K+ MES) WITH NA+
reference	Chang et al. 'To ? ? ?
source	Physarum polycephalum
experiment	X-ray (resolution=1.68, R-factor=?)
structural superfamily	His-Me finger endonucleases;
reference complex	8vms_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8vmo_A interface=54,56,60,62,64,66,71,73,115,119, altnaqilavidsweetvgqfpvithhvplggglqgtlhcyeiplaapygvgfAkNgptRwQyKrTinqvVhRwgshtvpfllepdningktctashlchntrchnplhlcwesLddnKgrnwcpgpnggcvhavvclrqgplygpgatvagpqqrgshfvv > 8vmo_B interface=54,56,60,62,64,66,71,73,115,119, altnaqilavidsweetvgqfpvithhvplggglqgtlhcyeiplaapygvgfAkNgptRwQyKrTinqvVhRwgshtvpfllepdningktctashlchntrchnplhlcwesLddnKgrnwcpgpnggcvhavvclrqgplygpgatvagpqqrgshfvv
interface signature	ANRQKTVRLK/ANRQKTVRLK

Estimated binding specificities ?

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# IC=21.035 IC/col=1.052 n_of_columns=20

specificity:

A |   6   0  30   0   0   0   1   1  11   0  94  77   0  73   0  96   0   1   0  96
C |   5   0   1  96   0  96  36  92   9   0   0   5   5   0   0   0   0  68  96   0
G |   5  96  59   0   0   0   2   3   7   0   1   3  86  23  96   0  96   3   0   0
T |  80   0   6   0  96   0  57   0  69  96   1  11   5   0   0   0   0  24   0   0

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updated Fri Aug 1 20:43:32 2025