8vmp_AB : 3D-footprint complex

structure name	HOMING ENDONUCLEASE I-PPOI-DNA COMPLEX:REACTION AT PH7.0 (K+ MES) WITH 500 UM MG2+ FOR 10S
reference	Chang et al. 'To ? ? ?
source	Physarum polycephalum
experiment	X-ray (resolution=1.45, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8vmp_A interface=54,56,60,62,64,66,71,73,115,119, altnaqilavidsweetvgqfpvithhvplggglqgtlhcyeiplaapygvgfAkNgptRwQyKrTinqvVhRwgshtvpfllepdningktctashlchntrchnplhlcwesLddnKgrnwcpgpnggcvhavvclrqgplygpgatvagpqqrgshfvv > 8vmp_B interface=54,56,60,62,64,66,71,73,115,119, altnaqilavidsweetvgqfpvithhvplggglqgtlhcyeiplaapygvgfAkNgptRwQyKrTinqvVhRwgshtvpfllepdningktctashlchntrchnplhlcwesLddnKgrnwcpgpnggcvhavvclrqgplygpgatvagpqqrgshfvv
interface signature	ANRQKTVRLK/ANRQKTVRLK

Estimated binding specificities ?

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# IC=21.269 IC/col=1.063 n_of_columns=20

specificity:

A |   0   0  16   0   0   0   4   3   7   0  96  78   0  69   0  96   0   5   0  78
C |   0   0   3  96   0  96  32  88  10   0   0   8   0   0   0   0   0  65  96   8
G |   0  96  74   0   0   0   1   5   7   0   0   5  96  26  96   0  96   7   0   5
T |  96   0   3   0  96   0  59   0  72  96   0   5   0   1   0   0   0  19   0   5

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updated Thu Sep 12 10:59:50 2024