8vmp_AB : 3D-footprint complex

structure name	HOMING ENDONUCLEASE I-PPOI-DNA COMPLEX:REACTION AT PH7.0 (K+ MES) WITH 500 UM MG2+ FOR 10S
reference	Chang et al. 'To ? ? ?
source	Physarum polycephalum
experiment	X-ray (resolution=1.45, R-factor=?)
structural superfamily	His-Me finger endonucleases;
reference complex	8vms_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8vmp_A interface=54,56,60,62,64,66,71,73,115,119, altnaqilavidsweetvgqfpvithhvplggglqgtlhcyeiplaapygvgfAkNgptRwQyKrTinqvVhRwgshtvpfllepdningktctashlchntrchnplhlcwesLddnKgrnwcpgpnggcvhavvclrqgplygpgatvagpqqrgshfvv > 8vmp_B interface=54,56,60,62,64,66,71,73,115,119, altnaqilavidsweetvgqfpvithhvplggglqgtlhcyeiplaapygvgfAkNgptRwQyKrTinqvVhRwgshtvpfllepdningktctashlchntrchnplhlcwesLddnKgrnwcpgpnggcvhavvclrqgplygpgatvagpqqrgshfvv
interface signature	ANRQKTVRLK/ANRQKTVRLK

Estimated binding specificities ?

readout + contact

# IC=21.151 IC/col=1.058 n_of_columns=20

specificity:

A |   6   0  15   0   0   0   3   0  11   0  96  71   0  67   0  96   0   3   0  96
C |   5   0   9  96   0  96  38  94   3   0   0  11   5   0   0   0   0  72  96   0
G |   3  96  67   0   0   0   1   1   4   0   0   3  84  29  96   0  96   6   0   0
T |  82   0   5   0  96   0  54   1  78  96   0  11   7   0   0   0   0  15   0   0

scan!

home
updated Fri Aug 1 20:43:45 2025