8vmq_AB : 3D-footprint complex

structure name	HOMING ENDONUCLEASE I-PPOI-DNA COMPLEX:REACTION AT PH7.0 (K+ MES) WITH 500 UM MG2+ FOR 20S
reference	Chang et al. 'To ? ? ?
source	Physarum polycephalum
experiment	X-ray (resolution=1.48, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8vmq_A interface=54,56,60,62,64,66,71,73,115,119, altnaqilavidsweetvgqfpvithhvplggglqgtlhcyeiplaapygvgfAkNgptRwQyKrTinqvVhRwgshtvpfllepdningktctashlchntrchnplhlcwesLddnKgrnwcpgpnggcvhavvclrqgplygpgatvagpqqrgshfvv > 8vmq_B interface=54,56,60,62,64,66,71,73,115,119, altnaqilavidsweetvgqfpvithhvplggglqgtlhcyeiplaapygvgfAkNgptRwQyKrTinqvVhRwgshtvpfllepdningktctashlchntrchnplhlcwesLddnKgrnwcpgpnggcvhavvclrqgplygpgatvagpqqrgshfvv
interface signature	ANRQKTVRLK/ANRQKTVRLK

Estimated binding specificities ?

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# IC=21.209 IC/col=1.060 n_of_columns=20

specificity:

A |   0   0  35   0   0   0   0   3   7   0  96  76   0  65   0  96   0   9   0  84
C |   0   0   5  96   0  96  17  86   7   0   0   7   0   0   0   0   0  51  96   3
G |   0  96  49   0   0   0   0   7   6   0   0   7  96  30  96   0  96   9   0   3
T |  96   0   7   0  96   0  79   0  76  96   0   6   0   1   0   0   0  27   0   6

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updated Thu Sep 12 11:00:02 2024