8vmr_AB : 3D-footprint complex

structure name	HOMING ENDONUCLEASE I-PPOI-DNA COMPLEX:REACTION AT PH7.0 (K+ MES) WITH 500 UM MG2+ FOR 40S
reference	Chang et al. 'To ? ? ?
source	Physarum polycephalum
experiment	X-ray (resolution=1.50, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8vmr_A interface=54,56,60,62,64,66,71,73,115,119, altnaqilavidsweetvgqfpvithhvplggglqgtlhcyeiplaapygvgfAkNgptRwQyKrTinqvVhRwgshtvpfllepdningktctashlchntrchnplhlcwesLddnKgrnwcpgpnggcvhavvclrqgplygpgatvagpqqrgshfvv > 8vmr_B interface=54,56,60,62,64,66,71,73,115,119, altnaqilavidsweetvgqfpvithhvplggglqgtlhcyeiplaapygvgfAkNgptRwQyKrTinqvVhRwgshtvpfllepdningktctashlchntrchnplhlcwesLddnKgrnwcpgpnggcvhavvclrqgplygpgatvagpqqrgshfvv
interface signature	ANRQKTVRLK/ANRQKTVRLK

Estimated binding specificities ?

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# IC=21.343 IC/col=1.067 n_of_columns=20

specificity:

A |   0   0  21   0   0   0   0   3   1   0  96  71   0  55   0  96   0   3   0  78
C |   0   0   5  96   0  96  34  92   7   0   0  11   0   0   0   0   0  49  96  12
G |   0  96  63   0   0   0   0   1   6   0   0   3  96  41  96   0  96  11   0   3
T |  96   0   7   0  96   0  62   0  82  96   0  11   0   0   0   0   0  33   0   3

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updated Thu Sep 12 11:00:13 2024