8vms_AB : 3D-footprint complex

structure name	HOMING ENDONUCLEASE I-PPOI-DNA COMPLEX:REACTION AT PH7.0 (K+ MES) WITH 500 UM MG2+ FOR 80S
reference	Chang et al. 'To ? ? ?
source	Physarum polycephalum
experiment	X-ray (resolution=1.42, R-factor=?)
structural superfamily	His-Me finger endonucleases;
reference complex	8vms_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8vms_A interface=54,56,60,62,64,66,71,73,115,119, altnaqilavidsweetvgqfpvithhvplggglqgtlhcyeiplaapygvgfAkNgptRwQyKrTinqvVhRwgshtvpfllepdningktctashlchntrchnplhlcwesLddnKgrnwcpgpnggcvhavvclrqgplygpgatvagpqqrgshfvv > 8vms_B interface=54,56,60,62,64,66,71,73,115,119, altnaqilavidsweetvgqfpvithhvplggglqgtlhcyeiplaapygvgfAkNgptRwQyKrTinqvVhRwgshtvpfllepdningktctashlchntrchnplhlcwesLddnKgrnwcpgpnggcvhavvclrqgplygpgatvagpqqrgshfvv
interface signature	ANRQKTVRLK/ANRQKTVRLK

Estimated binding specificities ?

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# IC=21.492 IC/col=1.075 n_of_columns=20

specificity:

A |   0   0  23   0   0   0   1   3   7   0  96  83   0  69   0  96   0  11   0  85
C |   0   0   3  96   0  96  32  88   3   0   0   5   0   0   0   0   0  61  96   3
G |   0  96  67   0   0   0   2   5  15   0   0   3  96  26  96   0  96   7   0   5
T |  96   0   3   0  96   0  61   0  71  96   0   5   0   1   0   0   0  17   0   3

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updated Fri Aug 1 20:44:35 2025