8vms_AB : 3D-footprint complex

structure name	HOMING ENDONUCLEASE I-PPOI-DNA COMPLEX:REACTION AT PH7.0 (K+ MES) WITH 500 UM MG2+ FOR 80S
reference	Chang et al. 'To ? ? ?
source	Physarum polycephalum
experiment	X-ray (resolution=1.42, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8vms_A interface=54,56,60,62,64,66,71,73,115,119, altnaqilavidsweetvgqfpvithhvplggglqgtlhcyeiplaapygvgfAkNgptRwQyKrTinqvVhRwgshtvpfllepdningktctashlchntrchnplhlcwesLddnKgrnwcpgpnggcvhavvclrqgplygpgatvagpqqrgshfvv > 8vms_B interface=54,56,60,62,64,66,71,73,115,119, altnaqilavidsweetvgqfpvithhvplggglqgtlhcyeiplaapygvgfAkNgptRwQyKrTinqvVhRwgshtvpfllepdningktctashlchntrchnplhlcwesLddnKgrnwcpgpnggcvhavvclrqgplygpgatvagpqqrgshfvv
interface signature	ANRQKTVRLK/ANRQKTVRLK

Estimated binding specificities ?

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# IC=21.234 IC/col=1.062 n_of_columns=20

specificity:

A |   0   0  11   0   0   0   1   5   9   0  96  76   0  69   0  96   0   8   0  80
C |   0   0   3  96   0  96  26  88   5   0   0   5   0   0   0   0   0  59  96   5
G |   0  96  76   0   0   0   4   3   9   0   0  10  95  26  96   0  96   5   0   3
T |  96   0   6   0  96   0  65   0  73  96   0   5   1   1   0   0   0  24   0   8

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updated Thu Sep 12 11:00:24 2024