8vmt_AB : 3D-footprint complex

structure name	HOMING ENDONUCLEASE I-PPOI-DNA COMPLEX:REACTION AT PH7.0 (K+ MES) WITH 500 UM MG2+ FOR 160S
reference	Chang et al. 'To ? ? ?
source	Physarum polycephalum
experiment	X-ray (resolution=1.48, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8vmt_A interface=54,56,60,62,64,66,71,73,115,119, altnaqilavidsweetvgqfpvithhvplggglqgtlhcyeiplaapygvgfAkNgptRwQyKrTinqvVhRwgshtvpfllepdningktctashlchntrchnplhlcwesLddnKgrnwcpgpnggcvhavvclrqgplygpgatvagpqqrgshfvv > 8vmt_B interface=54,56,60,62,64,66,71,73,115,119, altnaqilavidsweetvgqfpvithhvplggglqgtlhcyeiplaapygvgfAkNgptRwQyKrTinqvVhRwgshtvpfllepdningktctashlchntrchnplhlcwesLddnKgrnwcpgpnggcvhavvclrqgplygpgatvagpqqrgshfvv
interface signature	ANRQKTVRLK/ANRQKTVRLK

Estimated binding specificities ?

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# IC=21.130 IC/col=1.056 n_of_columns=20

specificity:

A |   0   0  35   0   0   0   0   5  10   0  96  78   0  28   0  96   0   7   0  84
C |   0   0   9  96   0  96  23  84   7   0   0   8   0   0   0   0   0  56  96   5
G |   0  96  49   0   0   0   1   7   7   0   0   3  96  67  96   0  96   5   0   4
T |  96   0   3   0  96   0  72   0  72  96   0   7   0   1   0   0   0  28   0   3

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updated Thu Sep 12 11:00:36 2024